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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.333 C 0.168 G 0.168 T 0.333 

MOTIF 1-CACTGAGA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 41 P= 9.5e-002
 0.001696 0.995753 0.000855 0.001696
 0.890334 0.000855 0.000855 0.107957
 0.001696 0.682424 0.314183 0.001696
 0.203373 0.000855 0.000855 0.794918
 0.001696 0.000855 0.960389 0.037060
 0.855027 0.107058 0.000855 0.037060
 0.198799 0.157061 0.642444 0.001696
 0.875865 0.000855 0.121584 0.001696

MOTIF 2-CTTAGMAK STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 5.0e-001
 0.003637 0.990894 0.001832 0.003637
 0.003637 0.001832 0.001832 0.992699
 0.003637 0.001832 0.001832 0.992699
 0.992699 0.001832 0.001832 0.003637
 0.003637 0.001832 0.990894 0.003637
 0.536567 0.382145 0.077650 0.003637
 0.992699 0.001832 0.001832 0.003637
 0.003637 0.001832 0.382145 0.612386

MOTIF 3-AATATATA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 83 P= 6.2e-001
 0.963782 0.001090 0.032964 0.002164
 0.871854 0.004803 0.069004 0.054339
 0.002164 0.013245 0.110540 0.874050
 0.815565 0.136882 0.045389 0.002164
 0.063492 0.060956 0.001090 0.874462
 0.928662 0.028404 0.040769 0.002164
 0.002164 0.001090 0.019768 0.976978
 0.942750 0.053996 0.001090 0.002164

MOTIF 4-TCGAAATG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 35 P= 9.5e-001
 0.068960 0.000812 0.000812 0.929416
 0.136742 0.707545 0.052754 0.102960
 0.050890 0.014730 0.932768 0.001613
 0.915606 0.034432 0.014730 0.035232
 0.963143 0.000812 0.000812 0.035232
 0.895796 0.000812 0.034432 0.068960
 0.039310 0.135615 0.068159 0.756916
 0.019727 0.017622 0.859855 0.102796

MOTIF 5-ACACCTAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 1.0e+000
 0.788475 0.052844 0.052844 0.105836
 0.023835 0.869082 0.001247 0.105836
 0.891670 0.104608 0.001247 0.002475
 0.105836 0.803658 0.001247 0.089259
 0.002475 0.993803 0.001247 0.002475
 0.002475 0.001247 0.059103 0.937175
 0.995031 0.001247 0.001247 0.002475
 0.788475 0.104608 0.052844 0.054073

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Six4.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Six4/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n01.farnam.hpc.yale.internal
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FINALTIME:	1.65 seconds
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