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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.323 C 0.177 G 0.177 T 0.323 

MOTIF 1-TCGCTCAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 5.0e-001
 0.054538 0.075749 0.000951 0.868761
 0.076420 0.771170 0.038290 0.114120
 0.039081 0.000951 0.958226 0.001742
 0.054538 0.868091 0.000951 0.076420
 0.039081 0.075749 0.075629 0.809541
 0.076540 0.846089 0.038290 0.039081
 0.877077 0.113088 0.000951 0.008884
 0.039081 0.038290 0.846089 0.076540

MOTIF 2-TACATATA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 93 P= 6.2e-001
 0.011092 0.012830 0.025038 0.951040
 0.949274 0.000622 0.004249 0.045855
 0.085996 0.796416 0.047699 0.069890
 0.848040 0.076911 0.025038 0.050011
 0.154384 0.004640 0.013778 0.827197
 0.956923 0.025038 0.000622 0.017417
 0.013014 0.074126 0.073949 0.838910
 0.843543 0.000622 0.049691 0.106144

MOTIF 3-AAGWGAAG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 66 P= 6.5e-001
 0.871673 0.015437 0.030540 0.082349
 0.923237 0.000384 0.060623 0.015756
 0.050693 0.000384 0.948221 0.000702
 0.267882 0.118041 0.174666 0.439410
 0.000702 0.045594 0.862654 0.091050
 0.769011 0.199747 0.000384 0.030859
 0.968423 0.015437 0.000384 0.015756
 0.218900 0.082030 0.576403 0.122667

MOTIF 4-ATTTGTTG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 40 P= 7.0e-001
 0.868636 0.060362 0.069114 0.001889
 0.082975 0.082118 0.022841 0.812065
 0.042367 0.041510 0.001031 0.915092
 0.042367 0.001031 0.041510 0.915092
 0.001889 0.041510 0.954713 0.001889
 0.001889 0.131108 0.001031 0.865972
 0.042367 0.001031 0.017788 0.938814
 0.009631 0.041510 0.946971 0.001889

MOTIF 5-AATGAAAT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 43 P= 1.0e+000
 0.835428 0.121664 0.041041 0.001867
 0.996093 0.001020 0.001020 0.001867
 0.001867 0.001020 0.001020 0.996093
 0.001867 0.154315 0.841950 0.001867
 0.794693 0.001020 0.202420 0.001867
 0.787316 0.081190 0.001020 0.130474
 0.956072 0.001020 0.041041 0.001867
 0.001867 0.001020 0.001020 0.996093

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Pif1B.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Pif1B/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n06.farnam.hpc.yale.internal
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FINALTIME:	2.13 seconds
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