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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.331 C 0.169 G 0.169 T 0.331 

MOTIF 1-AGCTGACT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 30 P= 2.4e-001
 0.840590 0.063280 0.000763 0.095367
 0.014432 0.063280 0.858180 0.064109
 0.095367 0.777345 0.063280 0.064008
 0.001492 0.169994 0.094638 0.733875
 0.095367 0.000763 0.839761 0.064109
 0.871949 0.000763 0.032021 0.095267
 0.001492 0.964995 0.032021 0.001492
 0.095267 0.138837 0.063280 0.702617

MOTIF 2-CCATCGAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 7.6e-001
 0.077418 0.904233 0.000921 0.017428
 0.065291 0.878612 0.000921 0.055175
 0.791991 0.076417 0.000921 0.130671
 0.092923 0.114164 0.038669 0.754244
 0.077418 0.919859 0.000921 0.001801
 0.039549 0.000921 0.919980 0.039549
 0.829739 0.000921 0.076417 0.092923
 0.565506 0.167538 0.189660 0.077297

MOTIF 3-ACATTAAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 61 P= 7.9e-001
 0.832701 0.143887 0.000695 0.022717
 0.001359 0.872477 0.081637 0.044527
 0.968774 0.029172 0.000695 0.001359
 0.101325 0.029172 0.016039 0.853465
 0.029836 0.000695 0.033692 0.935777
 0.847711 0.022053 0.080981 0.049255
 0.664139 0.006142 0.000695 0.329024
 0.777689 0.000695 0.016039 0.205577

MOTIF 4-AGAAAATA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 1.0e+000
 0.994721 0.001335 0.001335 0.002609
 0.002609 0.001335 0.993447 0.002609
 0.817876 0.001335 0.001335 0.179455
 0.497345 0.243203 0.110863 0.148589
 0.940045 0.001335 0.056011 0.002609
 0.994721 0.001335 0.001335 0.002609
 0.002609 0.001335 0.001335 0.994721
 0.994721 0.001335 0.001335 0.002609

MOTIF 5-AGCTTAGT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 1.0e+000
 0.996216 0.000957 0.000957 0.001871
 0.120029 0.000957 0.622953 0.256062
 0.096953 0.703479 0.040153 0.159415
 0.001871 0.000957 0.197697 0.799476
 0.018096 0.000957 0.000957 0.979990
 0.957020 0.000957 0.040153 0.001871
 0.001871 0.000957 0.995302 0.001871
 0.041067 0.040153 0.079349 0.839432

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Pif1A.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Pif1A/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n07.farnam.hpc.yale.internal
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FINALTIME:	1.85 seconds
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