******************************************************************************** STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey, "STREME: Accurate and versatile sequence motif discovery", bioRxiv, (preprint), Nov. 23, 2020. ******************************************************************************** ALPHABET= ACGT strands: + - Background letter frequencies A 0.308 C 0.192 G 0.192 T 0.308 MOTIF 1-AGAKGGCG STREME-1 letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 1.2e-001 0.955840 0.001110 0.041268 0.001782 0.001782 0.001110 0.995326 0.001782 0.915683 0.001110 0.081425 0.001782 0.001782 0.001110 0.463802 0.533306 0.021829 0.001110 0.975279 0.001782 0.001782 0.001110 0.955233 0.041875 0.082097 0.915011 0.001110 0.001782 0.001782 0.001110 0.995326 0.001782 MOTIF 2-ACTTCCGK STREME-2 letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 5.0e-001 0.976979 0.001241 0.001241 0.020540 0.001992 0.739315 0.001241 0.257453 0.001992 0.001241 0.001241 0.995527 0.001992 0.001241 0.001241 0.995527 0.046799 0.905162 0.046048 0.001992 0.046799 0.949969 0.001241 0.001992 0.001992 0.001241 0.949969 0.046799 0.046799 0.091144 0.559214 0.302843 MOTIF 3-AGTGTWGS STREME-3 letter-probability matrix: alength= 4 w= 8 nsites= 58 P= 7.6e-001 0.997629 0.000658 0.000658 0.001056 0.001056 0.000658 0.997231 0.001056 0.286650 0.000658 0.089124 0.623569 0.001056 0.000658 0.997231 0.001056 0.320156 0.000658 0.000658 0.678529 0.334038 0.000658 0.119607 0.545698 0.001056 0.000658 0.997231 0.001056 0.219303 0.476725 0.302917 0.001056 MOTIF 4-GGTCACAC STREME-4 letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.0e+000 0.002886 0.001797 0.992431 0.002886 0.002886 0.001797 0.992431 0.002886 0.002886 0.001797 0.001797 0.993519 0.002886 0.992431 0.001797 0.002886 0.993519 0.001797 0.001797 0.002886 0.002886 0.992431 0.001797 0.002886 0.928493 0.066824 0.001797 0.002886 0.002886 0.927509 0.001797 0.067808 MOTIF 5-CTGAGAAA STREME-5 letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000 0.003139 0.991768 0.001955 0.003139 0.073864 0.072566 0.143405 0.710165 0.003139 0.001955 0.991768 0.003139 0.992952 0.001955 0.001955 0.003139 0.003139 0.001955 0.991768 0.003139 0.851728 0.001955 0.072566 0.073750 0.780890 0.001955 0.143405 0.073750 0.851728 0.072566 0.001955 0.073750 ******************************************************************************** Stopped because maximum number of motifs (5) reached. ******************************************************************************** COMMAND: streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/NfI.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_NfI/ --w 8 --nmotifs 5 --verbosity 1 ******************************************************************************** CPU: c27n05.farnam.hpc.yale.internal ******************************************************************************** FINALTIME: 1.54 seconds ********************************************************************************