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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.254 C 0.246 G 0.246 T 0.254 

MOTIF 1-CCAATCAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 156 P= 1.3e-001
 0.000412 0.998775 0.000401 0.000412
 0.048761 0.895843 0.054984 0.000412
 0.937732 0.000401 0.011671 0.050196
 0.987516 0.000401 0.011671 0.000412
 0.000412 0.090231 0.000401 0.908956
 0.042967 0.832416 0.124205 0.000412
 0.664734 0.091456 0.243397 0.000412
 0.271123 0.138537 0.585262 0.005078

MOTIF 2-CCACCCCC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 53 P= 2.5e-001
 0.014959 0.949443 0.001180 0.034417
 0.101169 0.863234 0.034383 0.001215
 0.882859 0.014925 0.067799 0.034417
 0.001215 0.963188 0.001180 0.034417
 0.001215 0.801643 0.140083 0.057059
 0.001215 0.940546 0.001180 0.057059
 0.001215 0.931693 0.014580 0.052512
 0.001215 0.911989 0.067692 0.019105

MOTIF 3-ATGGCGGC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 41 P= 3.3e-001
 0.996678 0.001097 0.001097 0.001129
 0.062926 0.001097 0.031946 0.904031
 0.065660 0.031946 0.901265 0.001129
 0.037878 0.031946 0.929047 0.001129
 0.001129 0.996646 0.001097 0.001129
 0.057255 0.094244 0.847373 0.001129
 0.155973 0.001097 0.624857 0.218073
 0.062926 0.934848 0.001097 0.001129

MOTIF 4-GAAAGAGA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 49 P= 6.5e-001
 0.001465 0.068784 0.928286 0.001465
 0.995687 0.001424 0.001424 0.001465
 0.752919 0.130121 0.115495 0.001465
 0.955639 0.041473 0.001424 0.001465
 0.050041 0.041473 0.866972 0.041514
 0.989739 0.007373 0.001424 0.001465
 0.122031 0.018003 0.818452 0.041514
 0.895436 0.021448 0.081650 0.001465

MOTIF 5-CGAAAGGA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 7.6e-001
 0.042482 0.893088 0.021948 0.042482
 0.166224 0.001457 0.830820 0.001499
 0.913622 0.042439 0.042439 0.001499
 0.913622 0.042439 0.042439 0.001499
 0.872508 0.083553 0.042439 0.001499
 0.001499 0.001457 0.995544 0.001499
 0.001499 0.249346 0.706672 0.042482
 0.913490 0.083553 0.001457 0.001499

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Nf-YB.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Nf-YB/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n07.farnam.hpc.yale.internal
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FINALTIME:	1.63 seconds
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