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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.293 C 0.207 G 0.207 T 0.293 

MOTIF 1-GGTCACAC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 37 P= 2.4e-001
 0.001349 0.000956 0.996345 0.001349
 0.001349 0.000956 0.996345 0.001349
 0.001349 0.000956 0.000956 0.996738
 0.161612 0.804123 0.000956 0.033309
 0.900859 0.096835 0.000956 0.001349
 0.033309 0.964386 0.000956 0.001349
 0.772609 0.000956 0.128898 0.097537
 0.001349 0.996345 0.000956 0.001349

MOTIF 2-GGGAAATA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 36 P= 5.0e-001
 0.104692 0.001531 0.891616 0.002161
 0.002161 0.001531 0.994147 0.002161
 0.002161 0.001531 0.901026 0.095282
 0.841062 0.052715 0.104063 0.002161
 0.892410 0.001531 0.052715 0.053344
 0.943593 0.001531 0.001531 0.053344
 0.002161 0.001531 0.104063 0.892245
 0.658791 0.080609 0.052715 0.207886

MOTIF 3-AAAAATCG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 8.3e-001
 0.994096 0.001731 0.001731 0.002442
 0.710873 0.001731 0.187646 0.099750
 0.811636 0.001731 0.059585 0.127048
 0.936241 0.001731 0.059585 0.002442
 0.994096 0.001731 0.001731 0.002442
 0.002442 0.001731 0.001731 0.994096
 0.002442 0.993384 0.001731 0.002442
 0.002442 0.001731 0.993384 0.002442

MOTIF 4-GAAAATAC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 70 P= 8.8e-001
 0.000789 0.000559 0.932212 0.066439
 0.650802 0.043557 0.135925 0.169716
 0.784562 0.075388 0.019251 0.120800
 0.825041 0.038003 0.008297 0.128658
 0.858725 0.029323 0.094080 0.017873
 0.000789 0.036599 0.083246 0.879365
 0.819014 0.075388 0.056756 0.048842
 0.000789 0.926411 0.038003 0.034797

MOTIF 5-CATTCCAS STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 9.7e-001
 0.001789 0.765309 0.001268 0.231634
 0.741132 0.001268 0.170918 0.086682
 0.044167 0.171192 0.001268 0.783373
 0.001789 0.001268 0.001268 0.995675
 0.001789 0.995154 0.001268 0.001789
 0.001789 0.995154 0.001268 0.001789
 0.953297 0.043646 0.001268 0.001789
 0.171439 0.273902 0.510492 0.044167

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/NC2β.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_NC2β/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n03.farnam.hpc.yale.internal
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FINALTIME:	1.70 seconds
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