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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.288 C 0.212 G 0.212 T 0.288 

MOTIF 1-GTATGCAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 44 P= 4.8e-003
 0.026145 0.019309 0.928400 0.026145
 0.026145 0.019309 0.019309 0.935236
 0.935236 0.019309 0.019309 0.026145
 0.026145 0.019309 0.019309 0.935236
 0.026145 0.019309 0.928400 0.026145
 0.026145 0.928400 0.019309 0.026145
 0.935236 0.019309 0.019309 0.026145
 0.935236 0.019309 0.019309 0.026145

MOTIF 2-CCYAAAAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 85 P= 5.3e-003
 0.026785 0.886722 0.000400 0.086094
 0.000542 0.998517 0.000400 0.000542
 0.000542 0.527401 0.105102 0.366955
 0.647830 0.015035 0.243435 0.093700
 0.900663 0.026525 0.072271 0.000542
 0.998659 0.000400 0.000400 0.000542
 0.972533 0.000400 0.026525 0.000542
 0.000542 0.026567 0.972350 0.000542

MOTIF 3-GGCAACAC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 7.6e-001
 0.022586 0.001520 0.973837 0.002058
 0.002058 0.051188 0.944697 0.002058
 0.028776 0.947118 0.022048 0.002058
 0.845978 0.001520 0.051108 0.101394
 0.895726 0.051108 0.051108 0.002058
 0.002058 0.845440 0.100856 0.051646
 0.924787 0.051108 0.022048 0.002058
 0.161410 0.785424 0.051108 0.002058

MOTIF 4-AAACCCAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 7.6e-001
 0.870089 0.063674 0.001893 0.064344
 0.931870 0.001893 0.063674 0.002563
 0.931870 0.063674 0.001893 0.002563
 0.002563 0.682077 0.001893 0.313467
 0.002563 0.992980 0.001893 0.002563
 0.002563 0.869419 0.063674 0.064344
 0.931870 0.001893 0.001893 0.064344
 0.931870 0.001893 0.001893 0.064344

MOTIF 5-GAAAAACA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.002350 0.001735 0.993565 0.002350
 0.994179 0.001735 0.001735 0.002350
 0.823729 0.172186 0.001735 0.002350
 0.914100 0.001735 0.025180 0.058984
 0.937545 0.001735 0.058370 0.002350
 0.652076 0.287204 0.001735 0.058984
 0.002350 0.993565 0.001735 0.002350
 0.994179 0.001735 0.001735 0.002350

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/N.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_N/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n09.farnam.hpc.yale.internal
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FINALTIME:	1.89 seconds
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