********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.262 C 0.238 G 0.238 T 0.262 

MOTIF 1-VCACGTGB STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 175 P= 2.6e-004
 0.318220 0.229732 0.451666 0.000382
 0.032552 0.956591 0.010475 0.000382
 0.975960 0.005408 0.006021 0.012611
 0.026778 0.817122 0.000348 0.155752
 0.155752 0.000348 0.817122 0.026778
 0.012611 0.006021 0.005408 0.975960
 0.000382 0.010475 0.956591 0.032552
 0.000382 0.451666 0.229732 0.318220

MOTIF 2-TATCGATA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 39 P= 1.2e-001
 0.178833 0.001061 0.001061 0.819045
 0.996715 0.001061 0.001061 0.001163
 0.001163 0.189227 0.016500 0.793110
 0.163954 0.727970 0.001061 0.107016
 0.107016 0.001061 0.727970 0.163954
 0.793110 0.016500 0.189227 0.001163
 0.001163 0.001061 0.001061 0.996715
 0.819045 0.001061 0.001061 0.178833

MOTIF 3-AGAMGRAG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 50 P= 3.0e-001
 0.996528 0.001121 0.001121 0.001229
 0.001229 0.001121 0.996420 0.001229
 0.806517 0.001121 0.158547 0.033815
 0.389624 0.298147 0.147861 0.164367
 0.001229 0.001121 0.996420 0.001229
 0.656658 0.001121 0.340991 0.001229
 0.689349 0.308301 0.001121 0.001229
 0.001229 0.001121 0.996420 0.001229

MOTIF 4-AGTGTGAC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 5.0e-001
 0.909624 0.001474 0.087286 0.001616
 0.001616 0.001474 0.995294 0.001616
 0.130542 0.087286 0.087286 0.694885
 0.044453 0.001474 0.952457 0.001616
 0.044453 0.001474 0.001474 0.952599
 0.001616 0.001474 0.952457 0.044453
 0.995436 0.001474 0.001474 0.001616
 0.001616 0.995294 0.001474 0.001616

MOTIF 5-ATCAGTTG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 32 P= 5.0e-001
 0.801013 0.089139 0.059572 0.050276
 0.001103 0.030242 0.001006 0.967649
 0.030339 0.967552 0.001006 0.001103
 0.845340 0.030242 0.123315 0.001103
 0.001103 0.001006 0.996788 0.001103
 0.059669 0.298164 0.001006 0.641161
 0.059669 0.030242 0.001006 0.909083
 0.059669 0.001006 0.908986 0.030339

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Mnt.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Mnt/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c27n07.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	1.68 seconds
********************************************************************************