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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.307 C 0.193 G 0.193 T 0.307 

MOTIF 1-AGTGTTGC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 1.2e-001
 0.936982 0.017564 0.017564 0.027891
 0.027891 0.017564 0.926655 0.027891
 0.027891 0.017564 0.017564 0.936982
 0.027891 0.017564 0.926655 0.027891
 0.027891 0.017564 0.017564 0.936982
 0.027891 0.017564 0.017564 0.936982
 0.027891 0.017564 0.926655 0.027891
 0.027891 0.926655 0.017564 0.027891

MOTIF 2-GACATCAT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 5.0e-001
 0.002918 0.001838 0.992326 0.002918
 0.927480 0.001838 0.001838 0.068844
 0.002918 0.992326 0.001838 0.002918
 0.663244 0.001838 0.199935 0.134983
 0.002918 0.001838 0.001838 0.993407
 0.002918 0.992326 0.001838 0.002918
 0.861554 0.067764 0.067764 0.002918
 0.134983 0.266287 0.001838 0.596892

MOTIF 3-AGCTGCTA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 7.6e-001
 0.916364 0.002119 0.078152 0.003365
 0.003365 0.154428 0.838841 0.003365
 0.079398 0.762931 0.078152 0.079520
 0.079398 0.078152 0.078152 0.764299
 0.003365 0.078152 0.915118 0.003365
 0.003365 0.838841 0.154428 0.003365
 0.003365 0.002119 0.002119 0.992396
 0.992396 0.002119 0.002119 0.003365

MOTIF 4-GACTCTCC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.0e+000
 0.002383 0.001500 0.993735 0.002383
 0.810848 0.023784 0.055329 0.110039
 0.002383 0.939906 0.001500 0.056211
 0.002383 0.162986 0.001500 0.833132
 0.056211 0.886078 0.001500 0.056211
 0.056211 0.001500 0.001500 0.940788
 0.164041 0.778248 0.001500 0.056211
 0.110212 0.670070 0.055329 0.164388

MOTIF 5-ACTTCCTY STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.993401 0.001839 0.001839 0.002921
 0.002921 0.926330 0.067829 0.002921
 0.068910 0.133818 0.001839 0.795432
 0.002921 0.001839 0.001839 0.993401
 0.002921 0.992319 0.001839 0.002921
 0.002921 0.926330 0.067829 0.002921
 0.201102 0.200020 0.001839 0.597039
 0.068910 0.529968 0.001839 0.399283

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Mio.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Mio/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n12.farnam.hpc.yale.internal
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FINALTIME:	1.59 seconds
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