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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.292 C 0.208 G 0.208 T 0.292 

MOTIF 1-AGTGTGGC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 51 P= 3.3e-001
 0.969388 0.013375 0.015967 0.001270
 0.031446 0.000903 0.966380 0.001270
 0.001270 0.031030 0.073987 0.893712
 0.013742 0.091723 0.893264 0.001270
 0.001270 0.031030 0.031030 0.936669
 0.031398 0.000903 0.814321 0.153378
 0.260215 0.000903 0.707484 0.031398
 0.001270 0.996556 0.000903 0.001270

MOTIF 2-CGATAGCT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 48 P= 5.0e-001
 0.001333 0.996386 0.000947 0.001333
 0.001333 0.000947 0.933052 0.064667
 0.952068 0.014035 0.000947 0.032949
 0.001333 0.000947 0.000947 0.996772
 0.961321 0.000947 0.000947 0.036784
 0.017141 0.032563 0.885526 0.064769
 0.064667 0.581509 0.096255 0.257568
 0.064769 0.096102 0.009465 0.829664

MOTIF 3-ATATTTTA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 74 P= 6.2e-001
 0.797347 0.000804 0.200718 0.001131
 0.001131 0.236673 0.000804 0.761391
 0.848006 0.000804 0.000804 0.150386
 0.001131 0.000804 0.000804 0.997261
 0.163916 0.137076 0.000804 0.698205
 0.001131 0.027634 0.000804 0.970430
 0.041621 0.069596 0.000804 0.887979
 0.997261 0.000804 0.000804 0.001131

MOTIF 4-CTTGGAAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 34 P= 9.1e-001
 0.232131 0.764978 0.001201 0.001690
 0.041777 0.001201 0.041287 0.915735
 0.041777 0.001201 0.041287 0.915735
 0.001690 0.122043 0.874577 0.001690
 0.081992 0.001201 0.915117 0.001690
 0.875520 0.041287 0.081502 0.001690
 0.995907 0.001201 0.001201 0.001690
 0.915735 0.001201 0.041287 0.041777

MOTIF 5-AMTTGAAT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 1.0e+000
 0.994403 0.001643 0.001643 0.002312
 0.388005 0.608041 0.001643 0.002312
 0.112129 0.001643 0.001643 0.884586
 0.277119 0.001643 0.001643 0.719595
 0.002312 0.001643 0.993734 0.002312
 0.994403 0.001643 0.001643 0.002312
 0.994403 0.001643 0.001643 0.002312
 0.002312 0.001643 0.001643 0.994403

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Mad.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Mad/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n12.farnam.hpc.yale.internal
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FINALTIME:	2.26 seconds
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