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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.31 C 0.19 G 0.19 T 0.31 

MOTIF 1-GGTGGAAW STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 5.0e-001
 0.003192 0.001956 0.991660 0.003192
 0.032738 0.001956 0.962114 0.003192
 0.003192 0.001956 0.001956 0.992895
 0.074564 0.001956 0.890741 0.032738
 0.003192 0.001956 0.991660 0.003192
 0.778548 0.073329 0.001956 0.146166
 0.921523 0.073329 0.001956 0.003192
 0.362365 0.001956 0.144931 0.490748

MOTIF 2-TAAACTAT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 38 P= 7.0e-001
 0.002305 0.001413 0.126448 0.869834
 0.923608 0.011272 0.052956 0.012164
 0.856632 0.001413 0.052956 0.088998
 0.838638 0.022750 0.126448 0.012164
 0.002305 0.993977 0.001413 0.002305
 0.002305 0.001413 0.001413 0.994869
 0.994869 0.001413 0.001413 0.002305
 0.210239 0.088106 0.001413 0.700242

MOTIF 3-AGTGTACA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 8.8e-001
 0.797318 0.060603 0.119779 0.022300
 0.120800 0.001617 0.756592 0.120991
 0.061624 0.001617 0.001617 0.935142
 0.002638 0.001617 0.993107 0.002638
 0.061624 0.001617 0.026035 0.910724
 0.994128 0.001617 0.001617 0.002638
 0.002638 0.993107 0.001617 0.002638
 0.935142 0.001617 0.001617 0.061624

MOTIF 4-CATAATTT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 55 P= 9.5e-001
 0.001627 0.903250 0.016061 0.079062
 0.878977 0.073891 0.037444 0.009687
 0.001627 0.003992 0.074009 0.920372
 0.838482 0.089269 0.020604 0.051645
 0.908106 0.089269 0.000997 0.001627
 0.110035 0.016061 0.043666 0.830238
 0.038016 0.062201 0.007957 0.891826
 0.016691 0.016061 0.016061 0.951187

MOTIF 5-AAARACGT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 11 P= 1.0e+000
 0.909845 0.084240 0.002248 0.003667
 0.991838 0.002248 0.002248 0.003667
 0.827852 0.084240 0.084240 0.003667
 0.581609 0.002248 0.330483 0.085660
 0.991838 0.002248 0.002248 0.003667
 0.003667 0.990418 0.002248 0.003667
 0.003667 0.002248 0.990418 0.003667
 0.003667 0.002248 0.002248 0.991838

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Lpt.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Lpt/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n11.farnam.hpc.yale.internal
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FINALTIME:	1.59 seconds
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