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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.306 C 0.194 G 0.194 T 0.306 

MOTIF 1-ATTTGAAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 66 P= 1.2e-001
 0.896039 0.004635 0.027080 0.072247
 0.006652 0.018241 0.000734 0.974372
 0.001160 0.053340 0.041307 0.904194
 0.012031 0.005757 0.027165 0.955047
 0.027580 0.000734 0.858328 0.113358
 0.895940 0.005757 0.012754 0.085548
 0.748622 0.159576 0.079770 0.012031
 0.796995 0.053340 0.011605 0.138060

MOTIF 2-GTCACACW STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 52 P= 1.7e-001
 0.000766 0.108356 0.890111 0.000766
 0.079511 0.000485 0.000485 0.919519
 0.094812 0.675342 0.145258 0.084588
 0.850475 0.036850 0.111909 0.000766
 0.000766 0.997982 0.000485 0.000766
 0.869376 0.000485 0.000485 0.129653
 0.045791 0.952957 0.000485 0.000766
 0.329709 0.089509 0.000485 0.580297

MOTIF 3-GCGYTGCC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 49 P= 3.0e-001
 0.068783 0.000631 0.920251 0.010335
 0.182713 0.682623 0.045822 0.088842
 0.023556 0.023190 0.884508 0.068747
 0.010335 0.578331 0.000631 0.410703
 0.000997 0.023190 0.032529 0.943285
 0.046151 0.000631 0.907103 0.046115
 0.078049 0.875205 0.000631 0.046115
 0.010335 0.978699 0.000631 0.010335

MOTIF 4-CGATAAAT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 45 P= 5.0e-001
 0.014384 0.932949 0.019884 0.032783
 0.082099 0.013875 0.871243 0.032783
 0.881260 0.032274 0.032274 0.054193
 0.001387 0.006883 0.000878 0.990852
 0.857974 0.013875 0.095369 0.032783
 0.776579 0.032274 0.127275 0.063873
 0.819860 0.013875 0.158874 0.007392
 0.018303 0.032274 0.000878 0.948545

MOTIF 5-YTCTACAT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 1.0e+000
 0.001616 0.625109 0.001023 0.372253
 0.001616 0.294004 0.001023 0.703357
 0.001616 0.995746 0.001023 0.001616
 0.001616 0.001023 0.001023 0.996339
 0.849671 0.001023 0.147690 0.001616
 0.074773 0.886010 0.037601 0.001616
 0.996339 0.001023 0.001023 0.001616
 0.111469 0.001023 0.001023 0.886486

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Lhr.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Lhr/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n10.farnam.hpc.yale.internal
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FINALTIME:	1.65 seconds
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