********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.273 C 0.227 G 0.227 T 0.273 

MOTIF 1-AAGGGTTR STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 143 P= 1.8e-003
 0.994264 0.000311 0.005052 0.000373
 0.864117 0.000311 0.125716 0.009856
 0.000373 0.000311 0.998943 0.000373
 0.024686 0.009794 0.965147 0.000373
 0.082057 0.009794 0.907776 0.000373
 0.000373 0.009794 0.076815 0.913018
 0.038397 0.000311 0.023315 0.937977
 0.618258 0.016039 0.337078 0.028625

MOTIF 2-CAGCTGAC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 62 P= 5.0e-001
 0.041189 0.666015 0.017339 0.275457
 0.527868 0.127254 0.169053 0.175825
 0.307935 0.000550 0.690853 0.000661
 0.115402 0.858203 0.017339 0.009055
 0.017450 0.000550 0.034128 0.947872
 0.071055 0.008945 0.794813 0.125187
 0.848285 0.074710 0.017339 0.059666
 0.017477 0.957573 0.000550 0.024400

MOTIF 3-GTGGCCAG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 7.6e-001
 0.117233 0.039709 0.841545 0.001513
 0.078535 0.078159 0.001260 0.842046
 0.017430 0.039709 0.902898 0.039962
 0.039962 0.116980 0.841545 0.001513
 0.001513 0.957264 0.001260 0.039962
 0.001513 0.841793 0.001260 0.155434
 0.931297 0.001260 0.001260 0.066183
 0.067762 0.001260 0.891015 0.039962

MOTIF 4-CGMRGTCS STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 1.0e+000
 0.001887 0.994656 0.001571 0.001887
 0.001887 0.001571 0.994656 0.001887
 0.482161 0.322488 0.049506 0.145845
 0.611030 0.001571 0.385512 0.001887
 0.001887 0.001571 0.994656 0.001887
 0.001887 0.001571 0.001571 0.994971
 0.001887 0.994656 0.001571 0.001887
 0.001887 0.514380 0.337888 0.145845

MOTIF 5-CGGCAWTA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.002289 0.993515 0.001907 0.002289
 0.002289 0.001907 0.993515 0.002289
 0.002289 0.001907 0.993515 0.002289
 0.002289 0.877187 0.001907 0.118617
 0.877383 0.001907 0.118422 0.002289
 0.352023 0.001907 0.001907 0.644164
 0.002289 0.176774 0.234750 0.586187
 0.993898 0.001907 0.001907 0.002289

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Kr.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Kr/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c28n04.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	1.98 seconds
********************************************************************************