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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.282 C 0.218 G 0.218 T 0.282 

MOTIF 1-RTGAGTCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 104 P= 5.3e-003
 0.428384 0.074085 0.385755 0.111775
 0.000496 0.000383 0.000383 0.998738
 0.000496 0.000383 0.964804 0.034317
 0.925511 0.073610 0.000383 0.000496
 0.180770 0.000383 0.818351 0.000496
 0.000496 0.000383 0.000383 0.998738
 0.146308 0.852813 0.000383 0.000496
 0.998738 0.000383 0.000383 0.000496

MOTIF 2-CATTCCTG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 1.2e-001
 0.002108 0.994154 0.001631 0.002108
 0.839000 0.053452 0.001631 0.105917
 0.158073 0.001631 0.001631 0.838666
 0.053929 0.001631 0.011542 0.932898
 0.053929 0.942333 0.001631 0.002108
 0.127817 0.868445 0.001631 0.002108
 0.089268 0.023083 0.105440 0.782208
 0.002108 0.157596 0.786367 0.053929

MOTIF 3-GAGGGAGA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 3.0e-001
 0.002361 0.001827 0.993451 0.002361
 0.993986 0.001827 0.001827 0.002361
 0.060415 0.059881 0.643999 0.235704
 0.002361 0.001827 0.993451 0.002361
 0.177086 0.001827 0.818727 0.002361
 0.993986 0.001827 0.001827 0.002361
 0.002361 0.001827 0.877156 0.118657
 0.993986 0.001827 0.001827 0.002361

MOTIF 4-AAGTTAAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 7.6e-001
 0.934718 0.019827 0.019827 0.025627
 0.934718 0.019827 0.019827 0.025627
 0.025627 0.019827 0.928918 0.025627
 0.025627 0.019827 0.019827 0.934718
 0.025627 0.019827 0.019827 0.934718
 0.934718 0.019827 0.019827 0.025627
 0.934718 0.019827 0.019827 0.025627
 0.934718 0.019827 0.019827 0.025627

MOTIF 5-GAGAGCGA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.003632 0.002810 0.900609 0.092949
 0.990747 0.002810 0.002810 0.003632
 0.003632 0.002810 0.811292 0.182265
 0.990747 0.002810 0.002810 0.003632
 0.003632 0.271046 0.721689 0.003632
 0.003632 0.989925 0.002810 0.003632
 0.003632 0.002810 0.989925 0.003632
 0.990747 0.002810 0.002810 0.003632

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Jra.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Jra/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n11.farnam.hpc.yale.internal
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FINALTIME:	1.63 seconds
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