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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.289 C 0.211 G 0.211 T 0.289 

MOTIF 1-AAAACCGA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 89 P= 6.4e-002
 0.779018 0.066333 0.055929 0.098719
 0.594484 0.150323 0.133635 0.121558
 0.752448 0.003186 0.116767 0.127599
 0.886766 0.000438 0.000438 0.112359
 0.043601 0.918878 0.029179 0.008342
 0.058220 0.829304 0.000438 0.112039
 0.005876 0.072313 0.832192 0.089619
 0.693366 0.092679 0.030498 0.183458

MOTIF 2-CAAAGTSC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 34 P= 5.0e-001
 0.001633 0.995541 0.001193 0.001633
 0.744001 0.174698 0.079668 0.001633
 0.917506 0.001193 0.001193 0.080108
 0.956744 0.001193 0.040430 0.001633
 0.001633 0.001193 0.995541 0.001633
 0.001633 0.001193 0.001193 0.995981
 0.040807 0.276808 0.489551 0.192834
 0.001633 0.995541 0.001193 0.001633

MOTIF 3-CACTGCCA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 35 P= 5.0e-001
 0.001572 0.995708 0.001148 0.001572
 0.857176 0.076683 0.064569 0.001572
 0.001572 0.669583 0.092618 0.236227
 0.001572 0.001148 0.001148 0.996132
 0.001572 0.038855 0.958002 0.001572
 0.001572 0.958002 0.001148 0.039278
 0.001572 0.685273 0.273877 0.039278
 0.882890 0.038855 0.001148 0.077106

MOTIF 4-AGCGATGG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 33 P= 5.0e-001
 0.881757 0.001293 0.072716 0.044234
 0.001770 0.001293 0.995167 0.001770
 0.086835 0.910102 0.001293 0.001770
 0.001770 0.043757 0.952703 0.001770
 0.888734 0.005193 0.001293 0.104780
 0.044234 0.001293 0.001293 0.953179
 0.044302 0.149334 0.733171 0.073192
 0.044234 0.043757 0.696543 0.215466

MOTIF 5-ACGTAGCT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 1.0e+000
 0.994761 0.001555 0.001555 0.002129
 0.002129 0.840812 0.052626 0.104434
 0.104434 0.052626 0.738506 0.104434
 0.053199 0.001555 0.001555 0.943690
 0.841055 0.155261 0.001555 0.002129
 0.053199 0.052626 0.840976 0.053199
 0.104434 0.687600 0.103696 0.104270
 0.053199 0.103861 0.001555 0.841385

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Hr96.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Hr96/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n02.farnam.hpc.yale.internal
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FINALTIME:	1.73 seconds
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