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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.344 C 0.156 G 0.156 T 0.344 

MOTIF 1-ACCGCTTG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 5.0e-001
 0.940327 0.014218 0.014218 0.031236
 0.031236 0.923309 0.014218 0.031236
 0.031236 0.923309 0.014218 0.031236
 0.031236 0.014218 0.923309 0.031236
 0.031236 0.923309 0.014218 0.031236
 0.031236 0.014218 0.014218 0.940327
 0.031236 0.014218 0.014218 0.940327
 0.031236 0.014218 0.923309 0.031236

MOTIF 2-AAAATAAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.0e+000
 0.992814 0.001712 0.001712 0.003761
 0.992814 0.001712 0.001712 0.003761
 0.609274 0.154500 0.232465 0.003761
 0.992814 0.001712 0.001712 0.003761
 0.003761 0.001712 0.087435 0.907091
 0.762062 0.001712 0.232465 0.003761
 0.954874 0.039652 0.001712 0.003761
 0.992814 0.001712 0.001712 0.003761

MOTIF 3-ACAAGGTA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.992825 0.001710 0.001710 0.003756
 0.003756 0.686696 0.305793 0.003756
 0.992825 0.001710 0.001710 0.003756
 0.689768 0.001710 0.001710 0.306813
 0.003756 0.001710 0.990779 0.003756
 0.155284 0.001710 0.839251 0.003756
 0.232075 0.001710 0.001710 0.764506
 0.765533 0.153238 0.001710 0.079520

MOTIF 4-GTAAATAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.003774 0.001718 0.990733 0.003774
 0.003774 0.001718 0.001718 0.992789
 0.992789 0.001718 0.001718 0.003774
 0.681908 0.001718 0.001718 0.314656
 0.838420 0.001718 0.001718 0.158144
 0.079918 0.001718 0.001718 0.916646
 0.885386 0.077861 0.001718 0.035035
 0.839987 0.001718 0.077861 0.080433

MOTIF 5-AAARATGT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 10 P= 1.0e+000
 0.882256 0.002427 0.109986 0.005332
 0.989814 0.002427 0.002427 0.005332
 0.882256 0.109986 0.002427 0.005332
 0.558122 0.002427 0.434119 0.005332
 0.989814 0.002427 0.002427 0.005332
 0.005332 0.002427 0.002427 0.989814
 0.005332 0.002427 0.986909 0.005332
 0.005332 0.002427 0.002427 0.989814

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Hr78.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Hr78/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n01.farnam.hpc.yale.internal
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FINALTIME:	0.78 seconds
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