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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.338 C 0.162 G 0.162 T 0.338 

MOTIF 1-AGATGGCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.2e-001
 0.909139 0.001015 0.044374 0.045473
 0.002113 0.001015 0.994759 0.002113
 0.821930 0.001015 0.044444 0.132611
 0.132611 0.001015 0.001015 0.865360
 0.045473 0.001015 0.908040 0.045473
 0.002113 0.044444 0.951330 0.002113
 0.045473 0.933450 0.001015 0.020062
 0.715212 0.018964 0.263711 0.002113

MOTIF 2-ATCGATAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 5.0e-001
 0.774972 0.001284 0.111177 0.112567
 0.112567 0.001284 0.001284 0.884865
 0.002673 0.993369 0.001284 0.002673
 0.002673 0.001284 0.993369 0.002673
 0.884865 0.111177 0.001284 0.002673
 0.002673 0.001284 0.056142 0.939900
 0.884865 0.001284 0.001284 0.112567
 0.002673 0.001284 0.993369 0.002673

MOTIF 3-TAAATAAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 124 P= 6.1e-001
 0.002038 0.000978 0.000978 0.996005
 0.996005 0.000978 0.000978 0.002038
 0.971405 0.012462 0.014096 0.002038
 0.683289 0.000978 0.034428 0.281304
 0.002038 0.000978 0.000978 0.996005
 0.805856 0.028093 0.077554 0.088497
 0.936771 0.028853 0.032338 0.002038
 0.858798 0.059782 0.079383 0.002038

MOTIF 4-TAGGTCAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 74 P= 6.4e-001
 0.096697 0.030254 0.021474 0.851575
 0.785927 0.033087 0.090473 0.090513
 0.030608 0.030230 0.930964 0.008198
 0.024710 0.015290 0.867974 0.092026
 0.090368 0.015338 0.000350 0.893944
 0.069578 0.869488 0.030278 0.030656
 0.729508 0.105026 0.030230 0.135236
 0.724952 0.075098 0.066294 0.133656

MOTIF 5-ATGWTTAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 1.0e+000
 0.995505 0.001101 0.001101 0.002293
 0.002293 0.080243 0.001101 0.916363
 0.002293 0.001101 0.994313 0.002293
 0.334884 0.001101 0.001101 0.662914
 0.002293 0.010101 0.001101 0.986505
 0.002293 0.001101 0.190535 0.806071
 0.995505 0.001101 0.001101 0.002293
 0.967026 0.020580 0.010101 0.002293

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Hr46.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Hr46/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n05.farnam.hpc.yale.internal
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FINALTIME:	1.60 seconds
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