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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.347 C 0.153 G 0.153 T 0.347 

MOTIF 1-ATTTAAGA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 58 P= 3.6e-001
 0.961175 0.000686 0.036590 0.001549
 0.069645 0.031671 0.000686 0.897998
 0.160578 0.093741 0.000686 0.744995
 0.188392 0.000686 0.000686 0.810237
 0.722945 0.000686 0.221431 0.054938
 0.966094 0.000686 0.031671 0.001549
 0.001549 0.000686 0.996216 0.001549
 0.890929 0.000686 0.031671 0.076714

MOTIF 2-ACCTTATG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 5.0e-001
 0.864086 0.001436 0.066334 0.068143
 0.003245 0.992073 0.001436 0.003245
 0.003245 0.992073 0.001436 0.003245
 0.030111 0.066334 0.001436 0.902119
 0.068143 0.066334 0.001436 0.864086
 0.902119 0.001436 0.066334 0.030111
 0.068143 0.001436 0.001436 0.928984
 0.068143 0.131441 0.536320 0.264096

MOTIF 3-AAATATAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 90 P= 9.9e-001
 0.940025 0.002406 0.001429 0.056139
 0.865119 0.015554 0.033131 0.086195
 0.792452 0.002332 0.071953 0.133262
 0.001621 0.054812 0.002190 0.941377
 0.916715 0.003577 0.055189 0.024519
 0.001621 0.000717 0.066099 0.931563
 0.851247 0.022327 0.113721 0.012705
 0.838549 0.043726 0.033131 0.084594

MOTIF 4-ATGTCAAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.0e+000
 0.992388 0.001787 0.001787 0.004038
 0.004038 0.001787 0.082537 0.911638
 0.004038 0.001787 0.990137 0.004038
 0.004038 0.001787 0.001787 0.992388
 0.004038 0.990137 0.001787 0.004038
 0.715928 0.001787 0.244819 0.037466
 0.830628 0.001787 0.163548 0.004038
 0.750137 0.082537 0.082537 0.084788

MOTIF 5-CATTTTTA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.031509 0.923036 0.013945 0.031509
 0.940600 0.013945 0.013945 0.031509
 0.031509 0.013945 0.013945 0.940600
 0.031509 0.013945 0.013945 0.940600
 0.031509 0.013945 0.013945 0.940600
 0.031509 0.013945 0.013945 0.940600
 0.031509 0.013945 0.013945 0.940600
 0.940600 0.013945 0.013945 0.031509

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Hr4.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Hr4/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n09.farnam.hpc.yale.internal
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FINALTIME:	1.58 seconds
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