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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.222 C 0.278 G 0.278 T 0.222 

MOTIF 1-CCCCCTCC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 3.0e-001
 0.020155 0.934391 0.025300 0.020155
 0.020155 0.934391 0.025300 0.020155
 0.020155 0.934391 0.025300 0.020155
 0.020155 0.934391 0.025300 0.020155
 0.020155 0.934391 0.025300 0.020155
 0.020155 0.025300 0.025300 0.929245
 0.020155 0.934391 0.025300 0.020155
 0.020155 0.934391 0.025300 0.020155

MOTIF 2-AAGGAAAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 44 P= 3.0e-001
 0.959650 0.002080 0.002080 0.036190
 0.994184 0.002080 0.002080 0.001657
 0.001657 0.002080 0.994607 0.001657
 0.001657 0.002080 0.891007 0.105257
 0.994184 0.002080 0.002080 0.001657
 0.616375 0.192805 0.115920 0.074900
 0.810244 0.023523 0.164576 0.001657
 0.994184 0.002080 0.002080 0.001657

MOTIF 3-CCTTGGCC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 5.0e-001
 0.020155 0.934391 0.025300 0.020155
 0.020155 0.934391 0.025300 0.020155
 0.020155 0.025300 0.025300 0.929245
 0.020155 0.025300 0.025300 0.929245
 0.020155 0.025300 0.934391 0.020155
 0.020155 0.025300 0.934391 0.020155
 0.020155 0.934391 0.025300 0.020155
 0.020155 0.934391 0.025300 0.020155

MOTIF 4-WTKGCMAW STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 57 P= 5.0e-001
 0.433982 0.117702 0.060702 0.387614
 0.000653 0.000819 0.000819 0.997708
 0.115401 0.000819 0.574771 0.309009
 0.041503 0.000819 0.880428 0.077250
 0.077250 0.880428 0.000819 0.041503
 0.309009 0.574771 0.000819 0.115401
 0.997708 0.000819 0.000819 0.000653
 0.387614 0.060702 0.117702 0.433982

MOTIF 5-ATAAATTA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.994152 0.002091 0.002091 0.001666
 0.001666 0.002091 0.054177 0.942066
 0.576460 0.210937 0.002091 0.210512
 0.994152 0.002091 0.002091 0.001666
 0.942066 0.002091 0.054177 0.001666
 0.001666 0.002091 0.054177 0.942066
 0.001666 0.263190 0.106262 0.628882
 0.994152 0.002091 0.002091 0.001666

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Hr39.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Hr39/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n12.farnam.hpc.yale.internal
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FINALTIME:	1.85 seconds
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