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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.306 C 0.194 G 0.194 T 0.306 

MOTIF 1-CACTGAAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 5.0e-001
 0.001923 0.907731 0.088423 0.001923
 0.952110 0.001217 0.001217 0.045456
 0.001923 0.994937 0.001217 0.001923
 0.001923 0.044750 0.001217 0.952110
 0.001923 0.001217 0.994937 0.001923
 0.797366 0.001217 0.132236 0.069181
 0.724852 0.088423 0.176476 0.010250
 0.908577 0.001217 0.044750 0.045456

MOTIF 2-AWAAGCAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 5.0e-001
 0.993500 0.001816 0.001816 0.002869
 0.438694 0.001816 0.021109 0.538381
 0.993500 0.001816 0.001816 0.002869
 0.993500 0.001816 0.001816 0.002869
 0.002869 0.001816 0.992446 0.002869
 0.002869 0.992446 0.001816 0.002869
 0.666681 0.001816 0.001816 0.329687
 0.993500 0.001816 0.001816 0.002869

MOTIF 3-ACATATAG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 38 P= 7.0e-001
 0.953433 0.001184 0.001184 0.044200
 0.001870 0.995077 0.001184 0.001870
 0.953433 0.001184 0.043514 0.001870
 0.001870 0.001184 0.043514 0.953433
 0.911102 0.043514 0.001184 0.044200
 0.001870 0.001184 0.043514 0.953433
 0.808280 0.001184 0.085980 0.104556
 0.172636 0.043514 0.570049 0.213801

MOTIF 4-AAGAAACG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 7.6e-001
 0.929998 0.034265 0.034265 0.001472
 0.916092 0.067705 0.000932 0.015271
 0.001472 0.067705 0.929350 0.001472
 0.829570 0.000932 0.101253 0.068245
 0.982865 0.014731 0.000932 0.001472
 0.969066 0.000932 0.014731 0.015271
 0.001472 0.885900 0.101253 0.011375
 0.095228 0.067705 0.633975 0.203092

MOTIF 5-CAAAGTCC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 1.0e+000
 0.001952 0.994861 0.001235 0.001952
 0.730499 0.045415 0.133775 0.090311
 0.907218 0.001235 0.001235 0.090311
 0.907218 0.045415 0.045415 0.001952
 0.001952 0.001235 0.887689 0.109124
 0.001952 0.001235 0.001235 0.995578
 0.001952 0.772818 0.001235 0.223995
 0.223707 0.728926 0.045415 0.001952

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Hr38.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Hr38/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c17n10.farnam.hpc.yale.internal
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FINALTIME:	1.68 seconds
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