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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.297 C 0.203 G 0.203 T 0.297 

MOTIF 1-CAAAGTCC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 61 P= 4.9e-002
 0.000947 0.905688 0.022740 0.070625
 0.997760 0.000646 0.000646 0.000947
 0.997760 0.000646 0.000646 0.000947
 0.776754 0.066927 0.111185 0.045134
 0.000947 0.000646 0.997459 0.000947
 0.000947 0.000646 0.000646 0.997760
 0.111628 0.515293 0.133923 0.239155
 0.000947 0.975330 0.022775 0.000947

MOTIF 2-AKCAGCGG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 1.2e-001
 0.823231 0.001260 0.130596 0.044912
 0.088117 0.001260 0.562857 0.347766
 0.001847 0.865572 0.001260 0.131322
 0.736961 0.001260 0.216866 0.044912
 0.001847 0.001260 0.995047 0.001847
 0.001847 0.995047 0.001260 0.001847
 0.001847 0.001260 0.995047 0.001847
 0.001847 0.001260 0.951912 0.044982

MOTIF 3-AAATGAAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 41 P= 3.0e-001
 0.905299 0.042833 0.025763 0.026104
 0.864954 0.050956 0.067864 0.016226
 0.932595 0.043861 0.005783 0.017761
 0.007182 0.019506 0.010834 0.962479
 0.043224 0.150904 0.787277 0.018595
 0.959078 0.019506 0.008169 0.013247
 0.688052 0.004077 0.229331 0.078539
 0.929045 0.050875 0.005520 0.014560

MOTIF 4-CTTATCAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 6.7e-001
 0.002158 0.994211 0.001473 0.002158
 0.086813 0.001473 0.001473 0.910242
 0.052490 0.001473 0.001473 0.944565
 0.944565 0.001473 0.051804 0.002158
 0.052490 0.001473 0.051804 0.894234
 0.002158 0.943880 0.001473 0.052490
 0.843740 0.001473 0.102298 0.052490
 0.255446 0.102298 0.539273 0.102983

MOTIF 5-WACAAAGG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 1.0e+000
 0.554823 0.001605 0.111509 0.332063
 0.719767 0.001605 0.001605 0.277023
 0.002352 0.993690 0.001605 0.002352
 0.829582 0.001605 0.001605 0.167208
 0.994437 0.001605 0.001605 0.002352
 0.939574 0.056469 0.001605 0.002352
 0.002352 0.001605 0.993690 0.002352
 0.002352 0.001605 0.993690 0.002352

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Hnf4.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Hnf4/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n11.farnam.hpc.yale.internal
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FINALTIME:	1.59 seconds
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