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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.349 C 0.151 G 0.151 T 0.349 

MOTIF 1-GAAAATAT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 1.7e-001
 0.001690 0.000730 0.995890 0.001690
 0.944703 0.021042 0.009770 0.024485
 0.931329 0.014620 0.034283 0.019768
 0.963297 0.000730 0.000730 0.035242
 0.799517 0.135810 0.008944 0.055729
 0.001690 0.065423 0.000730 0.932157
 0.807414 0.021042 0.169854 0.001690
 0.039839 0.223329 0.014620 0.722212

MOTIF 2-AAATCTAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 7.6e-001
 0.993079 0.001605 0.001605 0.003712
 0.578297 0.075311 0.075311 0.271080
 0.814916 0.001605 0.179767 0.003712
 0.003712 0.001605 0.001605 0.993079
 0.003712 0.990971 0.001605 0.003712
 0.003712 0.001605 0.001605 0.993079
 0.993079 0.001605 0.001605 0.003712
 0.993079 0.001605 0.001605 0.003712

MOTIF 3-GTWCATAT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 8.3e-001
 0.002600 0.001124 0.993676 0.002600
 0.002600 0.001124 0.001124 0.995152
 0.624290 0.052751 0.001124 0.321835
 0.002600 0.993676 0.001124 0.002600
 0.943525 0.052751 0.001124 0.002600
 0.002600 0.001124 0.001124 0.995152
 0.840105 0.156170 0.001124 0.002600
 0.002600 0.260259 0.052751 0.684390

MOTIF 4-ATAACYTA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 9.5e-001
 0.992111 0.001829 0.001829 0.004231
 0.004231 0.001829 0.001829 0.992111
 0.908095 0.001829 0.085845 0.004231
 0.824080 0.169860 0.001829 0.004231
 0.004231 0.989708 0.001829 0.004231
 0.004231 0.338704 0.001829 0.655236
 0.004231 0.001829 0.001829 0.992111
 0.992111 0.001829 0.001829 0.004231

MOTIF 5-CGTAATAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.003814 0.990724 0.001649 0.003814
 0.003814 0.001649 0.990724 0.003814
 0.003814 0.001649 0.001649 0.992889
 0.992889 0.001649 0.001649 0.003814
 0.764985 0.229553 0.001649 0.003814
 0.003814 0.001649 0.001649 0.992889
 0.917165 0.077373 0.001649 0.003814
 0.765473 0.077373 0.001649 0.155505

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Hmx.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Hmx/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n07.farnam.hpc.yale.internal
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FINALTIME:	1.55 seconds
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