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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.263 C 0.237 G 0.237 T 0.263 

MOTIF 1-AGATGGCR STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 2.5e-002
 0.840817 0.001327 0.117655 0.040202
 0.001467 0.001327 0.995738 0.001467
 0.879426 0.001327 0.117780 0.001467
 0.040202 0.078920 0.040061 0.840817
 0.001467 0.001327 0.995738 0.001467
 0.117795 0.001327 0.840676 0.040202
 0.001467 0.957004 0.040061 0.001467
 0.409932 0.001327 0.587274 0.001467

MOTIF 2-MTATCGAT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 32 P= 5.0e-001
 0.501238 0.372253 0.124959 0.001550
 0.001550 0.001402 0.001402 0.995647
 0.995647 0.001402 0.001402 0.001550
 0.042471 0.042322 0.001402 0.913805
 0.018490 0.937572 0.001402 0.042537
 0.083523 0.001402 0.872604 0.042471
 0.995647 0.001402 0.001402 0.001550
 0.001550 0.001402 0.001402 0.995647

MOTIF 3-GACTGCTT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 40 P= 7.9e-001
 0.232003 0.001202 0.614090 0.152705
 0.887568 0.015737 0.060255 0.036440
 0.001330 0.981603 0.001202 0.015864
 0.060383 0.001202 0.036312 0.902102
 0.015864 0.001202 0.981603 0.001330
 0.001330 0.946493 0.036312 0.015864
 0.036440 0.001202 0.015737 0.946621
 0.071663 0.036312 0.036312 0.855713

MOTIF 4-AGCAACAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.0e+000
 0.932964 0.021582 0.021582 0.023873
 0.023873 0.021582 0.930673 0.023873
 0.023873 0.930673 0.021582 0.023873
 0.932964 0.021582 0.021582 0.023873
 0.932964 0.021582 0.021582 0.023873
 0.023873 0.930673 0.021582 0.023873
 0.932964 0.021582 0.021582 0.023873
 0.932964 0.021582 0.021582 0.023873

MOTIF 5-AGTGTGAC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 1.0e+000
 0.886045 0.037940 0.001254 0.074760
 0.001388 0.074626 0.885971 0.038015
 0.111623 0.001254 0.001254 0.885868
 0.001388 0.001254 0.959343 0.038015
 0.001388 0.001254 0.074626 0.922731
 0.001388 0.001254 0.885735 0.111623
 0.996103 0.001254 0.001254 0.001388
 0.111623 0.885735 0.001254 0.001388

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/HmgD.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_HmgD/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n07.farnam.hpc.yale.internal
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FINALTIME:	1.82 seconds
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