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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.329 C 0.171 G 0.171 T 0.329 

MOTIF 1-ACTGAGAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 43 P= 7.0e-001
 0.958046 0.000686 0.028455 0.012813
 0.001317 0.949973 0.047392 0.001317
 0.084759 0.083994 0.139622 0.691626
 0.029087 0.000686 0.885603 0.084625
 0.787830 0.182398 0.028455 0.001317
 0.015202 0.000686 0.899308 0.084804
 0.858465 0.056224 0.056224 0.029087
 0.239422 0.056224 0.675267 0.029087

MOTIF 2-CAAAATAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 46 P= 7.6e-001
 0.001457 0.996328 0.000759 0.001457
 0.951317 0.009882 0.006633 0.032168
 0.972457 0.025327 0.000759 0.001457
 0.817614 0.062280 0.075258 0.044848
 0.939497 0.006633 0.052413 0.001457
 0.001457 0.128337 0.129239 0.740967
 0.901366 0.072744 0.020674 0.005216
 0.891815 0.031470 0.075258 0.001457

MOTIF 3-ATATTTAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 56 P= 7.7e-001
 0.899642 0.024391 0.074233 0.001734
 0.001734 0.000903 0.158474 0.838889
 0.927930 0.069434 0.000903 0.001734
 0.223613 0.048131 0.020595 0.707661
 0.001734 0.023027 0.007893 0.967346
 0.001734 0.000903 0.000903 0.996461
 0.996461 0.000903 0.000903 0.001734
 0.885930 0.000903 0.111434 0.001734

MOTIF 4-ATGTATGA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 8.8e-001
 0.970275 0.001155 0.001155 0.027415
 0.002218 0.001155 0.001155 0.995472
 0.002218 0.094832 0.900732 0.002218
 0.142960 0.001155 0.001155 0.854730
 0.823142 0.094832 0.001155 0.080871
 0.021577 0.001155 0.047918 0.929350
 0.002218 0.114594 0.880969 0.002218
 0.707401 0.094832 0.094832 0.102936

MOTIF 5-ACGATGCG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 1.0e+000
 0.829099 0.076710 0.000936 0.093255
 0.001797 0.957583 0.038823 0.001797
 0.039684 0.038823 0.881809 0.039684
 0.882670 0.000936 0.000936 0.115458
 0.115581 0.190371 0.092394 0.601654
 0.077571 0.016620 0.790228 0.115581
 0.191415 0.767965 0.000936 0.039684
 0.039684 0.092516 0.752281 0.115519

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Hand.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Hand/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n05.farnam.hpc.yale.internal
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FINALTIME:	1.85 seconds
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