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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.307 C 0.193 G 0.193 T 0.307 

MOTIF 1-ATCGATAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 39 P= 5.5e-002
 0.838001 0.068652 0.000939 0.092409
 0.137364 0.102673 0.038841 0.721122
 0.015493 0.880553 0.068652 0.035302
 0.001500 0.000939 0.996062 0.001500
 0.968637 0.014932 0.014932 0.001500
 0.001500 0.000939 0.034741 0.962821
 0.845977 0.000939 0.137024 0.016060
 0.001500 0.000939 0.996062 0.001500

MOTIF 2-AAGGGTAT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 5.5e-002
 0.597013 0.001826 0.133539 0.267623
 0.927681 0.001826 0.067577 0.002917
 0.002917 0.001826 0.992340 0.002917
 0.002917 0.001826 0.992340 0.002917
 0.002917 0.001826 0.992340 0.002917
 0.002917 0.001826 0.067577 0.927681
 0.993431 0.001826 0.001826 0.002917
 0.002917 0.001826 0.133539 0.861718

MOTIF 3-CCACCTGT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 7.6e-001
 0.002925 0.860240 0.001831 0.135004
 0.002925 0.992319 0.001831 0.002925
 0.993413 0.001831 0.001831 0.002925
 0.002925 0.860240 0.001831 0.135004
 0.002925 0.926385 0.067765 0.002925
 0.002925 0.001831 0.001831 0.993413
 0.002925 0.133910 0.728161 0.135004
 0.068858 0.067765 0.067765 0.795612

MOTIF 4-CAGYRCTG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 60 P= 8.3e-001
 0.028234 0.946274 0.006728 0.018764
 0.907675 0.042018 0.000673 0.049634
 0.107813 0.012783 0.798672 0.080731
 0.013185 0.486815 0.073729 0.426271
 0.426271 0.073729 0.486815 0.013185
 0.080731 0.798672 0.012783 0.107813
 0.049634 0.000673 0.042018 0.907675
 0.018764 0.006728 0.946274 0.028234

MOTIF 5-GTTTTAAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 1.0e+000
 0.002138 0.001338 0.994386 0.002138
 0.002138 0.001338 0.001338 0.995185
 0.164144 0.021288 0.001338 0.813230
 0.002138 0.049529 0.001338 0.946995
 0.002138 0.001338 0.001338 0.995185
 0.995185 0.001338 0.001338 0.002138
 0.971090 0.001338 0.025434 0.002138
 0.745389 0.049529 0.202945 0.002138

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/HLH54F.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_HLH54F/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n06.farnam.hpc.yale.internal
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FINALTIME:	1.87 seconds
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