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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.36 C 0.14 G 0.14 T 0.36 

MOTIF 1-WTATTTAR STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 113 P= 1.9e-001
 0.631473 0.000607 0.000607 0.367312
 0.001564 0.266535 0.000607 0.731294
 0.660391 0.164001 0.174045 0.001564
 0.001564 0.000607 0.000607 0.997221
 0.001564 0.000607 0.000607 0.997221
 0.001564 0.000607 0.000607 0.997221
 0.997221 0.000607 0.000607 0.001564
 0.431503 0.168690 0.398243 0.001564

MOTIF 2-AKATTATA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 81 P= 2.5e-001
 0.882699 0.114629 0.000748 0.001925
 0.001925 0.000748 0.619370 0.377958
 0.996580 0.000748 0.000748 0.001925
 0.001925 0.000748 0.127337 0.869991
 0.001925 0.020708 0.115435 0.861932
 0.727802 0.090612 0.179662 0.001925
 0.001925 0.112061 0.000748 0.885267
 0.996580 0.000748 0.000748 0.001925

MOTIF 3-AAATGTTG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 40 P= 3.0e-001
 0.870066 0.034470 0.068367 0.027097
 0.926093 0.000682 0.068367 0.004858
 0.836846 0.102374 0.057512 0.003268
 0.035544 0.000682 0.102374 0.861400
 0.078241 0.017115 0.902888 0.001755
 0.035544 0.014669 0.000682 0.949105
 0.058586 0.014669 0.102374 0.824371
 0.109208 0.034470 0.840793 0.015528

MOTIF 4-CCAAGCCA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.0e+000
 0.245210 0.508363 0.001216 0.245210
 0.003129 0.992526 0.001216 0.003129
 0.934211 0.061444 0.001216 0.003129
 0.934211 0.001216 0.061444 0.003129
 0.123780 0.001216 0.811647 0.063357
 0.003129 0.992526 0.001216 0.003129
 0.003129 0.846943 0.026148 0.123780
 0.994440 0.001216 0.001216 0.003129

MOTIF 5-CTATCGAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 12 P= 1.0e+000
 0.003516 0.991602 0.001366 0.003516
 0.071196 0.001366 0.014311 0.913126
 0.926071 0.001366 0.001366 0.071196
 0.071196 0.001366 0.069046 0.858391
 0.003516 0.991602 0.001366 0.003516
 0.275550 0.001366 0.719568 0.003516
 0.898054 0.029383 0.001366 0.071196
 0.790493 0.069046 0.001366 0.139095

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/HLH106.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_HLH106/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n08.farnam.hpc.yale.internal
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FINALTIME:	1.54 seconds
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