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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.31 C 0.19 G 0.19 T 0.31 

MOTIF 1-RTACATAT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 46 P= 4.9e-002
 0.603547 0.001201 0.393294 0.001958
 0.001958 0.001201 0.001201 0.995639
 0.819805 0.001201 0.001201 0.177793
 0.001958 0.994882 0.001201 0.001958
 0.951840 0.045001 0.001201 0.001958
 0.001958 0.001201 0.133023 0.863818
 0.995639 0.001201 0.001201 0.001958
 0.001958 0.001201 0.001201 0.995639

MOTIF 2-ATGCAAAT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 75 P= 1.7e-001
 0.997957 0.000563 0.000563 0.000918
 0.084268 0.000563 0.185972 0.729197
 0.160685 0.000563 0.837835 0.000918
 0.000918 0.730736 0.072645 0.195702
 0.760777 0.000563 0.076195 0.162466
 0.997957 0.000563 0.000563 0.000918
 0.895208 0.103312 0.000563 0.000918
 0.000918 0.000563 0.060610 0.937909

MOTIF 3-CTGTTCGC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 2.4e-001
 0.001476 0.949478 0.033908 0.015138
 0.034479 0.133024 0.047571 0.784927
 0.015138 0.067018 0.916369 0.001476
 0.199601 0.000905 0.014567 0.784927
 0.001476 0.014567 0.000905 0.983052
 0.034532 0.696807 0.033908 0.234752
 0.100591 0.033908 0.831022 0.034479
 0.067588 0.850363 0.000905 0.081144

MOTIF 4-GTAAACAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 36 P= 7.0e-001
 0.001916 0.001175 0.994993 0.001916
 0.001916 0.001175 0.001175 0.995734
 0.995734 0.001175 0.001175 0.001916
 0.832361 0.121699 0.044025 0.001916
 0.866771 0.001175 0.001175 0.130879
 0.001916 0.866030 0.130138 0.001916
 0.824060 0.087012 0.001175 0.087753
 0.917775 0.079134 0.001175 0.001916

MOTIF 5-CACTTCCG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 34 P= 7.6e-001
 0.028173 0.926373 0.017282 0.028173
 0.937264 0.017282 0.017282 0.028173
 0.028173 0.926373 0.017282 0.028173
 0.028173 0.017282 0.017282 0.937264
 0.028173 0.017282 0.017282 0.937264
 0.028173 0.926373 0.017282 0.028173
 0.028173 0.926373 0.017282 0.028173
 0.028173 0.017282 0.926373 0.028173

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/HHEX.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_HHEX/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n04.farnam.hpc.yale.internal
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FINALTIME:	1.96 seconds
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