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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.303 C 0.197 G 0.197 T 0.303 

MOTIF 1-TGATAASA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 86 P= 2.0e-003
 0.050500 0.135971 0.000448 0.813081
 0.000691 0.000448 0.998170 0.000691
 0.871860 0.032035 0.047982 0.048123
 0.000691 0.000448 0.000448 0.998413
 0.935086 0.000448 0.016242 0.048225
 0.982619 0.016242 0.000448 0.000691
 0.000691 0.553987 0.444631 0.000691
 0.817239 0.107033 0.075037 0.000691

MOTIF 2-AAAGTGCA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 7.0e-001
 0.629404 0.074351 0.001039 0.295207
 0.871379 0.001039 0.052786 0.074796
 0.849814 0.037636 0.110949 0.001601
 0.001601 0.001039 0.995759 0.001601
 0.001601 0.001039 0.037636 0.959724
 0.173303 0.162932 0.662164 0.001601
 0.001601 0.995759 0.001039 0.001601
 0.996321 0.001039 0.001039 0.001601

MOTIF 3-GTCACACY STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 7.6e-001
 0.002281 0.001479 0.993960 0.002281
 0.002281 0.001479 0.001479 0.994761
 0.054401 0.889718 0.053600 0.002281
 0.890520 0.001479 0.001479 0.106522
 0.002281 0.837598 0.157841 0.002281
 0.786111 0.001479 0.210129 0.002281
 0.054401 0.941839 0.001479 0.002281
 0.002281 0.523696 0.001479 0.472544

MOTIF 4-CATCTCTA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 7.6e-001
 0.002592 0.933910 0.001681 0.061817
 0.816179 0.001681 0.001681 0.180459
 0.061817 0.001681 0.001681 0.934821
 0.002592 0.993136 0.001681 0.002592
 0.102206 0.120227 0.061002 0.716565
 0.002592 0.993136 0.001681 0.002592
 0.002592 0.120323 0.001681 0.875405
 0.994047 0.001681 0.001681 0.002592

MOTIF 5-ACCGCTTT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 1.0e+000
 0.936273 0.001643 0.001643 0.060440
 0.002534 0.993289 0.001643 0.002534
 0.002534 0.993289 0.001643 0.002534
 0.002534 0.099039 0.895894 0.002534
 0.060440 0.935383 0.001643 0.002534
 0.234720 0.059550 0.059550 0.646181
 0.060440 0.117456 0.059550 0.762554
 0.002534 0.001643 0.025615 0.970208

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/GATAd.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_GATAd/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n10.farnam.hpc.yale.internal
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FINALTIME:	2.14 seconds
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