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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.351 C 0.149 G 0.149 T 0.351 

MOTIF 1-CACTGTAC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 5.0e-001
 0.071660 0.771145 0.015192 0.142003
 0.926843 0.000748 0.000748 0.071660
 0.001768 0.960825 0.035638 0.001768
 0.001768 0.000748 0.070640 0.926843
 0.001768 0.000748 0.855480 0.142003
 0.176329 0.000748 0.000748 0.822174
 0.857064 0.035638 0.070640 0.036658
 0.001768 0.925823 0.000748 0.071660

MOTIF 2-GATTTCAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 34 P= 5.0e-001
 0.002321 0.000982 0.994376 0.002321
 0.995715 0.000982 0.000982 0.002321
 0.002321 0.046771 0.000982 0.949926
 0.021275 0.092706 0.046771 0.839248
 0.079334 0.046771 0.000982 0.872913
 0.002321 0.994376 0.000982 0.002321
 0.720097 0.046771 0.185023 0.048109
 0.720395 0.046771 0.092706 0.140128

MOTIF 3-TAAACAAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 5.0e-001
 0.031936 0.013518 0.013518 0.941027
 0.941027 0.013518 0.013518 0.031936
 0.941027 0.013518 0.013518 0.031936
 0.941027 0.013518 0.013518 0.031936
 0.031936 0.922609 0.013518 0.031936
 0.941027 0.013518 0.013518 0.031936
 0.941027 0.013518 0.013518 0.031936
 0.941027 0.013518 0.013518 0.031936

MOTIF 4-KAAATAGC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 9.5e-001
 0.002411 0.096329 0.516536 0.384725
 0.995547 0.001021 0.001021 0.002411
 0.995547 0.001021 0.001021 0.002411
 0.995547 0.001021 0.001021 0.002411
 0.002411 0.001021 0.001021 0.995547
 0.804932 0.001021 0.191636 0.002411
 0.002411 0.191791 0.803387 0.002411
 0.136233 0.860335 0.001021 0.002411

MOTIF 5-ACCTCTTT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 1.0e+000
 0.941027 0.013518 0.013518 0.031936
 0.031936 0.922609 0.013518 0.031936
 0.031936 0.922609 0.013518 0.031936
 0.031936 0.013518 0.013518 0.941027
 0.031936 0.922609 0.013518 0.031936
 0.031936 0.013518 0.013518 0.941027
 0.031936 0.013518 0.013518 0.941027
 0.031936 0.013518 0.013518 0.941027

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Fer3.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Fer3/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n03.farnam.hpc.yale.internal
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FINALTIME:	1.69 seconds
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