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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.336 C 0.164 G 0.164 T 0.336 

MOTIF 1-ATATKTAC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 52 P= 3.5e-001
 0.675932 0.220628 0.000541 0.102899
 0.001105 0.101487 0.000541 0.896867
 0.997813 0.000541 0.000541 0.001105
 0.001105 0.000541 0.000541 0.997813
 0.001105 0.000541 0.341659 0.656695
 0.001105 0.000541 0.000541 0.997813
 0.958767 0.030140 0.000541 0.010551
 0.001105 0.705619 0.292172 0.001105

MOTIF 2-ATAAATAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 44 P= 7.0e-001
 0.939600 0.014945 0.014945 0.030509
 0.030509 0.014945 0.014945 0.939600
 0.939600 0.014945 0.014945 0.030509
 0.939600 0.014945 0.014945 0.030509
 0.939600 0.014945 0.014945 0.030509
 0.030509 0.014945 0.014945 0.939600
 0.939600 0.014945 0.014945 0.030509
 0.939600 0.014945 0.014945 0.030509

MOTIF 3-GTACACAT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 7.6e-001
 0.030509 0.014945 0.924036 0.030509
 0.030509 0.014945 0.014945 0.939600
 0.939600 0.014945 0.014945 0.030509
 0.030509 0.924036 0.014945 0.030509
 0.939600 0.014945 0.014945 0.030509
 0.030509 0.924036 0.014945 0.030509
 0.939600 0.014945 0.014945 0.030509
 0.030509 0.014945 0.014945 0.939600

MOTIF 4-CTAAGCAG STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 1.0e+000
 0.002400 0.994024 0.001176 0.002400
 0.151591 0.050746 0.001176 0.796487
 0.945678 0.050746 0.001176 0.002400
 0.896107 0.050746 0.001176 0.051971
 0.151591 0.001176 0.844833 0.002400
 0.002400 0.944454 0.001176 0.051971
 0.846537 0.050746 0.050746 0.051971
 0.101701 0.001176 0.795423 0.101701

MOTIF 5-ATCGATAG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 17 P= 1.0e+000
 0.599404 0.057558 0.113963 0.229075
 0.002722 0.057558 0.001334 0.938387
 0.002722 0.993222 0.001334 0.002722
 0.002722 0.001334 0.993222 0.002722
 0.938387 0.001334 0.057558 0.002722
 0.002722 0.001334 0.001334 0.994611
 0.850460 0.001334 0.113963 0.034244
 0.002722 0.001334 0.993222 0.002722

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Fer2.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Fer2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n03.farnam.hpc.yale.internal
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FINALTIME:	1.65 seconds
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