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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.347 C 0.153 G 0.153 T 0.347 

MOTIF 1-MYTTAARK STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 66 P= 5.0e-001
 0.485497 0.512134 0.000726 0.001642
 0.150979 0.298328 0.000726 0.549966
 0.001642 0.129875 0.000726 0.867757
 0.001642 0.000726 0.000726 0.996905
 0.996905 0.000726 0.000726 0.001642
 0.867757 0.000726 0.129875 0.001642
 0.549966 0.000726 0.298328 0.150979
 0.001642 0.000726 0.512134 0.485497

MOTIF 2-CACTGARM STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 42 P= 7.9e-001
 0.001218 0.997026 0.000539 0.001218
 0.997705 0.000539 0.000539 0.001218
 0.001218 0.997026 0.000539 0.001218
 0.269568 0.000539 0.122519 0.607374
 0.001218 0.000539 0.997026 0.001218
 0.647213 0.246639 0.000539 0.105610
 0.629029 0.000539 0.369215 0.001218
 0.570650 0.309881 0.118251 0.001218

MOTIF 3-ACCAATTT STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 35 P= 9.1e-001
 0.860942 0.113659 0.000829 0.024570
 0.001875 0.995421 0.000829 0.001875
 0.001875 0.844737 0.000829 0.152559
 0.800896 0.075928 0.000829 0.122346
 0.847836 0.021029 0.038318 0.092817
 0.001875 0.038318 0.038318 0.921488
 0.064930 0.000829 0.000829 0.933412
 0.190535 0.000829 0.000829 0.807807

MOTIF 4-CCCTAGCA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.0e+000
 0.003533 0.991372 0.001562 0.003533
 0.003533 0.991372 0.001562 0.003533
 0.003533 0.779237 0.143061 0.074169
 0.074169 0.001562 0.001562 0.922707
 0.922707 0.001562 0.072198 0.003533
 0.003533 0.072198 0.779237 0.145032
 0.145032 0.849873 0.001562 0.003533
 0.852071 0.072198 0.001562 0.074169

MOTIF 5-CTAAAATC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.0e+000
 0.002442 0.994036 0.001080 0.002442
 0.002442 0.001080 0.001080 0.995398
 0.700080 0.001080 0.001080 0.297760
 0.946575 0.001080 0.001080 0.051266
 0.839432 0.098884 0.049903 0.011780
 0.897594 0.098884 0.001080 0.002442
 0.002442 0.001080 0.001080 0.995398
 0.002442 0.994036 0.001080 0.002442

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Evar3-9.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Evar3-9/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n03.farnam.hpc.yale.internal
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FINALTIME:	1.57 seconds
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