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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.248 C 0.252 G 0.252 T 0.248 

MOTIF 1-CAGCTGCC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 99 P= 1.9e-002
 0.000471 0.998581 0.000478 0.000471
 0.911347 0.087704 0.000478 0.000471
 0.000471 0.234471 0.645770 0.119288
 0.000471 0.998581 0.000478 0.000471
 0.000471 0.000478 0.000478 0.998574
 0.000471 0.000478 0.998581 0.000471
 0.098781 0.687108 0.000478 0.213634
 0.000471 0.791730 0.061933 0.145865

MOTIF 2-AAAMGGGA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 48 P= 1.7e-001
 0.655230 0.318639 0.025258 0.000873
 0.865087 0.000885 0.133154 0.000873
 0.620412 0.000885 0.255492 0.123210
 0.576882 0.294149 0.030448 0.098522
 0.000873 0.000885 0.997369 0.000873
 0.000873 0.000885 0.913925 0.084317
 0.000873 0.000885 0.997369 0.000873
 0.997356 0.000885 0.000885 0.000873

MOTIF 3-CAGGTAGA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 32 P= 5.0e-001
 0.040846 0.798192 0.040866 0.120095
 0.916728 0.001433 0.001433 0.080407
 0.080407 0.001433 0.916749 0.001412
 0.001412 0.001433 0.995743 0.001412
 0.001412 0.001433 0.001433 0.995723
 0.995723 0.001433 0.001433 0.001412
 0.001412 0.001433 0.876868 0.120287
 0.634328 0.200526 0.062357 0.102789

MOTIF 4-AAACAAAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 101 P= 9.4e-001
 0.963520 0.000508 0.000508 0.035464
 0.765445 0.000508 0.205571 0.028476
 0.817282 0.181710 0.000508 0.000500
 0.000500 0.727181 0.000508 0.271811
 0.660559 0.065309 0.026417 0.247715
 0.838048 0.000508 0.160944 0.000500
 0.773236 0.000508 0.225755 0.000500
 0.516955 0.223007 0.162078 0.097961

MOTIF 5-CACGCGCC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 36 P= 1.0e+000
 0.030462 0.967416 0.001068 0.001053
 0.955227 0.001068 0.030477 0.013227
 0.001053 0.878619 0.001068 0.119259
 0.001053 0.001068 0.996826 0.001053
 0.072394 0.866572 0.059981 0.001053
 0.059966 0.050533 0.829536 0.059966
 0.050517 0.905778 0.013243 0.030462
 0.034029 0.786730 0.059981 0.119259

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Esplm5-HLH.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Esplm5-HLH/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n04.farnam.hpc.yale.internal
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FINALTIME:	1.84 seconds
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