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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.286 C 0.214 G 0.214 T 0.286 

MOTIF 1-CAATWRGA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 221 P= 2.5e-007
 0.034594 0.964885 0.000223 0.000298
 0.984808 0.007441 0.007453 0.000298
 0.992026 0.000223 0.000223 0.007528
 0.000298 0.014683 0.000223 0.984796
 0.626531 0.051040 0.000223 0.322206
 0.351137 0.008317 0.632154 0.008392
 0.000298 0.000223 0.999181 0.000298
 0.879557 0.083498 0.036647 0.000298

MOTIF 2-ACATACAT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 1.2e-001
 0.805423 0.044310 0.019120 0.131147
 0.001775 0.995124 0.001325 0.001775
 0.909466 0.001325 0.001325 0.087884
 0.001775 0.001325 0.130696 0.866203
 0.861266 0.001325 0.049524 0.087884
 0.001775 0.995124 0.001325 0.001775
 0.917000 0.019120 0.019120 0.044761
 0.001775 0.073624 0.044310 0.880290

MOTIF 3-CTWATWAG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 39 P= 1.2e-001
 0.001576 0.995671 0.001177 0.001576
 0.001576 0.165236 0.001177 0.832011
 0.449902 0.077562 0.115786 0.356749
 0.996071 0.001177 0.001177 0.001576
 0.001576 0.001177 0.001177 0.996071
 0.356749 0.115786 0.077562 0.449902
 0.832011 0.001177 0.165236 0.001576
 0.001576 0.001177 0.995671 0.001576

MOTIF 4-AAAAGAGC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 30 P= 2.4e-001
 0.885985 0.037877 0.037877 0.038262
 0.849122 0.037877 0.074739 0.038262
 0.922610 0.074739 0.001133 0.001518
 0.848885 0.001133 0.111720 0.038262
 0.001518 0.001133 0.885244 0.112105
 0.959473 0.037877 0.001133 0.001518
 0.001518 0.001133 0.995832 0.001518
 0.186428 0.700334 0.001133 0.112105

MOTIF 5-AGTGTGGG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 1.0e+000
 0.820928 0.001339 0.001339 0.176394
 0.001794 0.044779 0.951633 0.001794
 0.019777 0.001339 0.001339 0.977545
 0.001794 0.001339 0.995072 0.001794
 0.045234 0.001339 0.044779 0.908649
 0.019777 0.044779 0.890211 0.045234
 0.176394 0.088358 0.690015 0.045234
 0.088813 0.088358 0.777596 0.045234

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Elba2.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Elba2/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n12.farnam.hpc.yale.internal
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FINALTIME:	1.83 seconds
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