******************************************************************************** STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey, "STREME: Accurate and versatile sequence motif discovery", bioRxiv, (preprint), Nov. 23, 2020. ******************************************************************************** ALPHABET= ACGT strands: + - Background letter frequencies A 0.295 C 0.205 G 0.205 T 0.295 MOTIF 1-ATAYRTAT STREME-1 letter-probability matrix: alength= 4 w= 8 nsites= 41 P= 1.2e-002 0.686790 0.071852 0.239362 0.001997 0.001997 0.001390 0.001390 0.995223 0.995223 0.001390 0.001390 0.001997 0.001997 0.615832 0.048339 0.333832 0.333832 0.048339 0.615832 0.001997 0.001997 0.001390 0.001390 0.995223 0.995223 0.001390 0.001390 0.001997 0.001997 0.239362 0.071852 0.686790 MOTIF 2-CAAAGAAA STREME-2 letter-probability matrix: alength= 4 w= 8 nsites= 44 P= 9.5e-002 0.180272 0.720018 0.097841 0.001868 0.863605 0.001300 0.089298 0.045797 0.915609 0.001300 0.081222 0.001868 0.995531 0.001300 0.001300 0.001868 0.001868 0.001300 0.994963 0.001868 0.951602 0.001300 0.045229 0.001868 0.995531 0.001300 0.001300 0.001868 0.863605 0.045229 0.001300 0.089866 MOTIF 3-CTGATAAG STREME-3 letter-probability matrix: alength= 4 w= 8 nsites= 111 P= 1.7e-001 0.000537 0.517483 0.231415 0.250565 0.156162 0.210116 0.038250 0.595472 0.016564 0.000374 0.982525 0.000537 0.998715 0.000374 0.000374 0.000537 0.042815 0.000374 0.000374 0.956438 0.840241 0.000374 0.019312 0.140073 0.998715 0.000374 0.000374 0.000537 0.000537 0.146814 0.771960 0.080689 MOTIF 4-ACAAATTG STREME-4 letter-probability matrix: alength= 4 w= 8 nsites= 16 P= 1.0e+000 0.991723 0.002408 0.002408 0.003460 0.003460 0.990671 0.002408 0.003460 0.910367 0.002408 0.002408 0.084816 0.991723 0.002408 0.002408 0.003460 0.991723 0.002408 0.002408 0.003460 0.003460 0.002408 0.002408 0.991723 0.084816 0.002408 0.002408 0.910367 0.003460 0.002408 0.990671 0.003460 MOTIF 5-GTCCACAA STREME-5 letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 1.0e+000 0.002383 0.001659 0.993575 0.002383 0.002383 0.001659 0.001659 0.994299 0.002383 0.993575 0.001659 0.002383 0.002383 0.769249 0.001659 0.226709 0.994299 0.001659 0.001659 0.002383 0.002383 0.899324 0.001659 0.096633 0.770153 0.113732 0.113732 0.002383 0.489611 0.225985 0.225985 0.058420 ******************************************************************************** Stopped because maximum number of motifs (5) reached. ******************************************************************************** COMMAND: streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Eip93F.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Eip93F/ --w 8 --nmotifs 5 --verbosity 1 ******************************************************************************** CPU: c27n11.farnam.hpc.yale.internal ******************************************************************************** FINALTIME: 1.70 seconds ********************************************************************************