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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.344 C 0.156 G 0.156 T 0.344 

MOTIF 1-ATTCCGTT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 5.0e-001
 0.995606 0.001045 0.001045 0.002304
 0.048730 0.047470 0.001045 0.902755
 0.002304 0.047470 0.047470 0.902755
 0.021523 0.779515 0.047470 0.151492
 0.188906 0.736470 0.020263 0.054361
 0.151492 0.047470 0.798733 0.002304
 0.048730 0.047470 0.001045 0.902755
 0.002304 0.001045 0.001045 0.995606

MOTIF 2-ACACYGAA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 7.6e-001
 0.992833 0.001704 0.001704 0.003758
 0.003758 0.990780 0.001704 0.003758
 0.992833 0.001704 0.001704 0.003758
 0.003758 0.990780 0.001704 0.003758
 0.003758 0.305333 0.153396 0.537513
 0.003758 0.001704 0.990780 0.003758
 0.992833 0.001704 0.001704 0.003758
 0.841385 0.077428 0.077428 0.003758

MOTIF 3-TTAAGTAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 51 P= 8.3e-001
 0.071080 0.040200 0.047089 0.841631
 0.099227 0.040200 0.000630 0.859943
 0.862633 0.015709 0.060904 0.060754
 0.741089 0.040200 0.166406 0.052305
 0.064738 0.043867 0.862020 0.029374
 0.008869 0.098195 0.028615 0.864322
 0.920649 0.062044 0.012215 0.005092
 0.834723 0.003200 0.141282 0.020796

MOTIF 4-ATATGTCT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 38 P= 9.7e-001
 0.976403 0.000838 0.000838 0.021921
 0.092216 0.000838 0.016260 0.890686
 0.933818 0.000838 0.000838 0.064505
 0.113966 0.038091 0.000838 0.847105
 0.045739 0.000838 0.951574 0.001849
 0.001849 0.000838 0.075463 0.921850
 0.202991 0.644041 0.151119 0.001849
 0.114147 0.038091 0.000838 0.846924

MOTIF 5-ATTTGARG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.992271 0.001838 0.001838 0.004053
 0.004053 0.001838 0.001838 0.992271
 0.004053 0.001838 0.001838 0.992271
 0.004053 0.001838 0.001838 0.992271
 0.004053 0.001838 0.990056 0.004053
 0.992271 0.001838 0.001838 0.004053
 0.581295 0.001838 0.412814 0.004053
 0.004053 0.001838 0.990056 0.004053

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Eip78C.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Eip78C/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n06.farnam.hpc.yale.internal
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FINALTIME:	1.60 seconds
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