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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.299 C 0.201 G 0.201 T 0.299 

MOTIF 1-AGCAGTGC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 54 P= 2.5e-002
 0.997713 0.000656 0.000656 0.000975
 0.000975 0.000656 0.988033 0.010336
 0.023587 0.974782 0.000656 0.000975
 0.975102 0.000656 0.023267 0.000975
 0.000975 0.000656 0.997394 0.000975
 0.007067 0.000656 0.000656 0.991622
 0.061787 0.010016 0.788174 0.140023
 0.084315 0.914054 0.000656 0.000975

MOTIF 2-AACTGCTT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 2.4e-001
 0.995159 0.001388 0.001388 0.002065
 0.995159 0.001388 0.001388 0.002065
 0.002065 0.994482 0.001388 0.002065
 0.002065 0.001388 0.049255 0.947292
 0.021880 0.049332 0.926723 0.002065
 0.002065 0.994482 0.001388 0.002065
 0.002065 0.001388 0.001388 0.995159
 0.002065 0.001388 0.001388 0.995159

MOTIF 3-ACACACAC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 31 P= 8.3e-001
 0.993765 0.001788 0.001788 0.002660
 0.002660 0.992893 0.001788 0.002660
 0.790808 0.125494 0.001788 0.081910
 0.002660 0.992893 0.001788 0.002660
 0.808204 0.063442 0.001788 0.126566
 0.002660 0.918112 0.001788 0.077441
 0.993765 0.001788 0.001788 0.002660
 0.002660 0.992893 0.001788 0.002660

MOTIF 4-GGAAAACK STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 27 P= 1.0e+000
 0.002138 0.001437 0.994287 0.002138
 0.002138 0.001437 0.994287 0.002138
 0.846312 0.001437 0.100554 0.051696
 0.796674 0.050996 0.150192 0.002138
 0.895871 0.050996 0.050996 0.002138
 0.747036 0.001437 0.199831 0.051696
 0.002138 0.994287 0.001437 0.002138
 0.002138 0.001437 0.349308 0.647117

MOTIF 5-WATCGATW STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 1.0e+000
 0.382260 0.001602 0.001602 0.614536
 0.939068 0.056946 0.001602 0.002384
 0.137632 0.001602 0.001602 0.859163
 0.002384 0.993631 0.001602 0.002384
 0.002384 0.001602 0.993631 0.002384
 0.859163 0.001602 0.001602 0.137632
 0.002384 0.001602 0.056946 0.939068
 0.614536 0.001602 0.001602 0.382260

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Eip74EF.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Eip74EF/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n12.farnam.hpc.yale.internal
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FINALTIME:	1.84 seconds
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