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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.259 C 0.241 G 0.241 T 0.259 

MOTIF 1-CAATGAMC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 140 P= 2.7e-003
 0.010131 0.908853 0.080652 0.000364
 0.979422 0.010107 0.000340 0.010131
 0.642424 0.000340 0.074091 0.283145
 0.021114 0.273930 0.000340 0.704615
 0.149767 0.000340 0.835719 0.014174
 0.998955 0.000340 0.000340 0.000364
 0.371522 0.627774 0.000340 0.000364
 0.061507 0.872688 0.005224 0.060581

MOTIF 2-AGCTCCAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 5.0e-001
 0.993435 0.002138 0.002138 0.002290
 0.002290 0.063517 0.931903 0.002290
 0.228286 0.618921 0.150503 0.002290
 0.002290 0.002138 0.002138 0.993435
 0.228286 0.767286 0.002138 0.002290
 0.002290 0.783735 0.002138 0.211838
 0.993435 0.002138 0.002138 0.002290
 0.002290 0.002138 0.993282 0.002290

MOTIF 3-TATAAATA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 5.0e-001
 0.250743 0.001722 0.001722 0.745812
 0.994710 0.001722 0.001722 0.001845
 0.250743 0.001722 0.001722 0.745812
 0.845854 0.001722 0.150578 0.001845
 0.796873 0.051182 0.100641 0.051304
 0.796873 0.001722 0.150100 0.051304
 0.001845 0.001722 0.001722 0.994710
 0.994710 0.001722 0.001722 0.001845

MOTIF 4-CTCCGYCT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 33 P= 8.8e-001
 0.001031 0.886393 0.111546 0.001031
 0.028654 0.083834 0.083922 0.803590
 0.001031 0.720338 0.000962 0.277669
 0.001031 0.996977 0.000962 0.001031
 0.001031 0.000962 0.886348 0.111659
 0.001031 0.664957 0.000962 0.333050
 0.028654 0.803432 0.000962 0.166951
 0.001031 0.139348 0.000962 0.858659

MOTIF 5-AAGGCGGC STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 1.0e+000
 0.994524 0.001783 0.001783 0.001910
 0.738230 0.104333 0.052976 0.104460
 0.001910 0.001783 0.994397 0.001910
 0.053103 0.001783 0.789130 0.155984
 0.001910 0.822190 0.087887 0.088014
 0.001910 0.001783 0.994397 0.001910
 0.155984 0.052976 0.737937 0.053103
 0.001910 0.943204 0.052976 0.001910

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/EcR.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_EcR/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c22n08.farnam.hpc.yale.internal
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FINALTIME:	1.84 seconds
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