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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.303 C 0.197 G 0.197 T 0.303 

MOTIF 1-GGTCACAC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 1.2e-001
 0.001877 0.001223 0.995024 0.001877
 0.001877 0.001223 0.995024 0.001877
 0.044849 0.001223 0.001223 0.952704
 0.001877 0.995024 0.001223 0.001877
 0.952704 0.044196 0.001223 0.001877
 0.001877 0.952051 0.001223 0.044849
 0.823648 0.087307 0.044196 0.044849
 0.001877 0.995024 0.001223 0.001877

MOTIF 2-AGRTGGCG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 1.7e-001
 0.995940 0.001149 0.001149 0.001763
 0.001763 0.001149 0.995326 0.001763
 0.385397 0.001149 0.611691 0.001763
 0.001763 0.001149 0.001149 0.995940
 0.082483 0.001149 0.914606 0.001763
 0.001763 0.001149 0.914345 0.082743
 0.099321 0.857408 0.001149 0.042123
 0.001763 0.001149 0.995326 0.001763

MOTIF 3-AAAGTATG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 41 P= 2.4e-001
 0.968084 0.000825 0.000825 0.030266
 0.909805 0.000825 0.088103 0.001266
 0.909805 0.000825 0.088103 0.001266
 0.001266 0.000825 0.996642 0.001266
 0.001266 0.000825 0.000825 0.997083
 0.997083 0.000825 0.000825 0.001266
 0.001266 0.000825 0.000825 0.997083
 0.001266 0.000825 0.996642 0.001266

MOTIF 4-GGCAGCAC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 37 P= 5.0e-001
 0.037545 0.000917 0.905924 0.055613
 0.227420 0.000917 0.756914 0.014749
 0.001407 0.964040 0.000917 0.033636
 0.839599 0.007082 0.033146 0.120173
 0.022893 0.000917 0.910326 0.065864
 0.033636 0.964040 0.000917 0.001407
 0.862626 0.038261 0.000917 0.098196
 0.033636 0.886138 0.014259 0.065967

MOTIF 5-ATTYTACA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 32 P= 1.0e+000
 0.994876 0.001450 0.001450 0.002224
 0.002224 0.001450 0.001450 0.994876
 0.002224 0.103475 0.001450 0.892852
 0.002224 0.436242 0.001450 0.560084
 0.002224 0.001450 0.001450 0.994876
 0.994876 0.001450 0.001450 0.002224
 0.002224 0.994102 0.001450 0.002224
 0.994876 0.001450 0.001450 0.002224

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Ebx.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Ebx/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n09.farnam.hpc.yale.internal
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FINALTIME:	1.62 seconds
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