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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.26 C 0.24 G 0.24 T 0.26 

MOTIF 1-AAGGTCAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 117 P= 3.2e-006
 0.881406 0.000668 0.097882 0.020044
 0.978668 0.011076 0.001533 0.008723
 0.081853 0.000668 0.872982 0.044498
 0.000726 0.000668 0.959121 0.039486
 0.034011 0.005497 0.039428 0.921064
 0.000726 0.911505 0.055003 0.032765
 0.931707 0.008665 0.058902 0.000726
 0.648969 0.197997 0.078314 0.074720

MOTIF 2-HCAGCTGD STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 7.6e-001
 0.451971 0.232799 0.057509 0.257721
 0.001732 0.994943 0.001594 0.001732
 0.972031 0.001594 0.001594 0.024782
 0.001732 0.001594 0.994943 0.001732
 0.001732 0.994943 0.001594 0.001732
 0.024782 0.001594 0.001594 0.972031
 0.001732 0.001594 0.994943 0.001732
 0.257721 0.057509 0.232799 0.451971

MOTIF 3-CTTATCRC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 1.0e+000
 0.001559 0.953943 0.042939 0.001559
 0.001559 0.001435 0.001435 0.995571
 0.001559 0.042939 0.001435 0.954067
 0.995571 0.001435 0.001435 0.001559
 0.001559 0.084576 0.060120 0.853744
 0.001559 0.995447 0.001435 0.001559
 0.521310 0.018616 0.458515 0.001559
 0.252268 0.578320 0.126349 0.043063

MOTIF 4-AGGAGAYK STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 1.0e+000
 0.990450 0.003094 0.003094 0.003362
 0.003362 0.003094 0.990182 0.003362
 0.003362 0.003094 0.990182 0.003362
 0.990450 0.003094 0.003094 0.003362
 0.003362 0.003094 0.990182 0.003362
 0.990450 0.003094 0.003094 0.003362
 0.003362 0.451454 0.003094 0.542090
 0.003362 0.182091 0.452323 0.362223

MOTIF 5-CCCTTCAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 30 P= 1.0e+000
 0.094875 0.902347 0.001331 0.001447
 0.001447 0.995775 0.001331 0.001447
 0.001447 0.738054 0.259052 0.001447
 0.040023 0.001331 0.078359 0.880287
 0.001447 0.001331 0.001331 0.995890
 0.001447 0.918623 0.078483 0.001447
 0.583990 0.259052 0.039845 0.117113
 0.583741 0.233160 0.001331 0.181767

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/ERR.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_ERR/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n02.farnam.hpc.yale.internal
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FINALTIME:	1.85 seconds
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