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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.312 C 0.188 G 0.188 T 0.312 

MOTIF 1-AACGAAAT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 52 P= 1.2e-001
 0.862368 0.006200 0.016065 0.115367
 0.900388 0.029156 0.057724 0.012732
 0.086706 0.754691 0.057632 0.100970
 0.001276 0.052414 0.860469 0.085841
 0.941576 0.044626 0.012522 0.001276
 0.985431 0.012522 0.000771 0.001276
 0.973680 0.000771 0.012522 0.013027
 0.005033 0.006200 0.086201 0.902566

MOTIF 2-ATCGATAT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 40 P= 5.0e-001
 0.988547 0.009212 0.000844 0.001397
 0.001397 0.053090 0.000844 0.944670
 0.016928 0.849667 0.094332 0.039073
 0.061289 0.003400 0.881669 0.053643
 0.809937 0.125697 0.031906 0.032459
 0.001397 0.000844 0.000844 0.996915
 0.934590 0.000844 0.063169 0.001397
 0.001397 0.016375 0.158187 0.824041

MOTIF 3-ATTCCWAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 5.0e-001
 0.992710 0.001994 0.001994 0.003301
 0.003301 0.075526 0.001994 0.919178
 0.003301 0.149058 0.001994 0.845646
 0.003301 0.991403 0.001994 0.003301
 0.003301 0.991403 0.001994 0.003301
 0.447358 0.032385 0.075408 0.444848
 0.992710 0.001994 0.001994 0.003301
 0.992710 0.001994 0.001994 0.003301

MOTIF 4-TAAGCAAC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 19 P= 7.6e-001
 0.048248 0.001254 0.001254 0.949243
 0.957188 0.020368 0.001254 0.021190
 0.856900 0.047426 0.047426 0.048248
 0.048248 0.047500 0.902176 0.002076
 0.048248 0.902176 0.001254 0.048322
 0.818920 0.085257 0.001254 0.094568
 0.911016 0.020368 0.020368 0.048248
 0.048248 0.716068 0.001254 0.234430

MOTIF 5-ACAGCWCT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.993015 0.001911 0.001911 0.003163
 0.003163 0.991762 0.001911 0.003163
 0.781752 0.142828 0.072256 0.003163
 0.003163 0.001911 0.991762 0.003163
 0.003163 0.991762 0.001911 0.003163
 0.499006 0.001911 0.072256 0.426826
 0.003163 0.991762 0.001911 0.003163
 0.003163 0.001911 0.001911 0.993015

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Dip3.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Dip3/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n06.farnam.hpc.yale.internal
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FINALTIME:	1.76 seconds
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