********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.234 C 0.266 G 0.266 T 0.234 

MOTIF 1-GCAACACC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 64 P= 9.5e-002
 0.018849 0.041372 0.938966 0.000812
 0.000812 0.997453 0.000923 0.000812
 0.944567 0.005522 0.049099 0.000812
 0.835637 0.138579 0.000923 0.024862
 0.000812 0.997453 0.000923 0.000812
 0.908717 0.000923 0.049099 0.041262
 0.000812 0.712056 0.000923 0.286209
 0.000812 0.890035 0.051970 0.057182

MOTIF 2-ACGCCCAC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 59 P= 1.2e-001
 0.831574 0.059532 0.051898 0.056996
 0.009243 0.955462 0.006415 0.028880
 0.075066 0.001072 0.922919 0.000944
 0.113231 0.837767 0.048059 0.000944
 0.079521 0.862591 0.029008 0.028880
 0.000944 0.969105 0.001072 0.028880
 0.857047 0.140938 0.001072 0.000944
 0.012508 0.954152 0.032397 0.000944

MOTIF 3-KCCDCCTC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 99 P= 3.6e-001
 0.031712 0.146213 0.413988 0.408087
 0.048012 0.950984 0.000534 0.000470
 0.000470 0.923065 0.075994 0.000470
 0.209257 0.135904 0.413958 0.240881
 0.155408 0.696011 0.000534 0.148047
 0.000470 0.598401 0.212261 0.188868
 0.000470 0.000534 0.075728 0.923267
 0.097994 0.866187 0.000534 0.035284

MOTIF 4-AGGAACTR STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 5.0e-001
 0.990921 0.003152 0.003152 0.002775
 0.002775 0.003152 0.991298 0.002775
 0.002775 0.003152 0.991298 0.002775
 0.826319 0.003152 0.003152 0.167377
 0.908752 0.085321 0.003152 0.002775
 0.084944 0.744527 0.003152 0.167377
 0.002775 0.003152 0.085321 0.908752
 0.333043 0.003152 0.661030 0.002775

MOTIF 5-AGAAATGT STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 14 P= 1.0e+000
 0.735780 0.066589 0.195466 0.002166
 0.002166 0.002460 0.864538 0.130836
 0.992914 0.002460 0.002460 0.002166
 0.966367 0.029007 0.002460 0.002166
 0.928786 0.002460 0.066589 0.002166
 0.002166 0.002460 0.066589 0.928786
 0.195171 0.002460 0.736074 0.066294
 0.002166 0.002460 0.002460 0.992914

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Dfd.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Dfd/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c27n08.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	1.54 seconds
********************************************************************************