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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.231 C 0.269 G 0.269 T 0.231 

MOTIF 1-ACCCGAAG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 122 P= 1.1e-001
 0.611440 0.000621 0.129928 0.258011
 0.080268 0.666177 0.177511 0.076044
 0.200207 0.771761 0.027500 0.000532
 0.000532 0.998315 0.000621 0.000532
 0.000532 0.000621 0.998315 0.000532
 0.998227 0.000621 0.000621 0.000532
 0.942241 0.008611 0.016602 0.032546
 0.000532 0.012606 0.967811 0.019050

MOTIF 2-AGCCGAGC STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 86 P= 2.6e-001
 0.934701 0.063542 0.000946 0.000811
 0.000811 0.074071 0.924307 0.000811
 0.041765 0.956479 0.000946 0.000811
 0.038430 0.900051 0.019755 0.041765
 0.000811 0.025334 0.973045 0.000811
 0.972949 0.025295 0.000946 0.000811
 0.097954 0.025295 0.844475 0.032276
 0.057883 0.675459 0.058018 0.208639

MOTIF 3-ACTGAAGC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 5.0e-001
 0.933460 0.062220 0.002326 0.001994
 0.001994 0.993685 0.002326 0.001994
 0.001994 0.002326 0.002326 0.993353
 0.061888 0.027120 0.849103 0.061888
 0.993353 0.002326 0.002326 0.001994
 0.908666 0.062220 0.002326 0.026788
 0.001994 0.062220 0.833053 0.102733
 0.001994 0.753531 0.062220 0.182255

MOTIF 4-ACGAACGC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 33 P= 6.7e-001
 0.961445 0.001348 0.036052 0.001156
 0.001156 0.996341 0.001348 0.001156
 0.001156 0.001348 0.996341 0.001156
 0.954807 0.036052 0.007986 0.001156
 0.724112 0.105796 0.064488 0.105604
 0.001156 0.920183 0.007986 0.070676
 0.141157 0.070868 0.786819 0.001156
 0.001156 0.880411 0.058907 0.059526

MOTIF 5-GATTCGGA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 7.6e-001
 0.002038 0.002377 0.993547 0.002038
 0.993208 0.002377 0.002377 0.002038
 0.002038 0.002377 0.002377 0.993208
 0.063240 0.002377 0.186872 0.747511
 0.002038 0.993547 0.002377 0.002038
 0.002038 0.002377 0.932345 0.063240
 0.002038 0.002377 0.993547 0.002038
 0.993208 0.002377 0.002377 0.002038

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Deaf1.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Deaf1/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n07.farnam.hpc.yale.internal
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FINALTIME:	1.64 seconds
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