********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.29 C 0.21 G 0.21 T 0.29 

MOTIF 1-AAAGTATC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 1.2e-001
 0.912602 0.001262 0.042830 0.043305
 0.987789 0.001262 0.001262 0.009688
 0.912535 0.042830 0.042897 0.001737
 0.001737 0.018470 0.894786 0.085008
 0.001737 0.126370 0.001262 0.870632
 0.954171 0.001262 0.001262 0.043305
 0.085008 0.018470 0.018470 0.878052
 0.210926 0.661235 0.042830 0.085008

MOTIF 2-SCARCACT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 67 P= 2.4e-001
 0.079045 0.537032 0.383272 0.000651
 0.000651 0.982622 0.000473 0.016254
 0.881153 0.047472 0.000473 0.070902
 0.504806 0.000473 0.277180 0.217540
 0.000651 0.998225 0.000473 0.000651
 0.522164 0.235149 0.031679 0.211007
 0.000651 0.998225 0.000473 0.000651
 0.000651 0.000473 0.000473 0.998403

MOTIF 3-GCTATCGA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 45 P= 3.0e-001
 0.163005 0.180123 0.551984 0.104888
 0.001242 0.906700 0.090816 0.001242
 0.001242 0.000902 0.000902 0.996953
 0.996953 0.000902 0.000902 0.001242
 0.017261 0.013210 0.000902 0.968627
 0.001242 0.984306 0.000902 0.013549
 0.001242 0.000902 0.996613 0.001242
 0.847727 0.000902 0.120398 0.030972

MOTIF 4-GTCACACY STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 1.0e+000
 0.002628 0.001909 0.992835 0.002628
 0.065524 0.001909 0.001909 0.930658
 0.065524 0.929939 0.001909 0.002628
 0.867762 0.064805 0.001909 0.065524
 0.002628 0.992835 0.001909 0.002628
 0.804664 0.001909 0.001909 0.191517
 0.065524 0.929939 0.001909 0.002628
 0.002628 0.568375 0.001909 0.427088

MOTIF 5-AATAGATG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 38 P= 1.0e+000
 0.926161 0.001065 0.071308 0.001466
 0.841447 0.071252 0.085835 0.001466
 0.001466 0.036158 0.001065 0.961310
 0.775501 0.186874 0.036158 0.001466
 0.001466 0.036158 0.960909 0.001466
 0.855691 0.001065 0.036158 0.107085
 0.071765 0.001065 0.071252 0.855918
 0.107085 0.001065 0.855290 0.036559

********************************************************************************
Stopped because maximum number of motifs (5) reached.
********************************************************************************
COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Dad.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Dad/ --w 8 --nmotifs 5 --verbosity 1
********************************************************************************
CPU:		c28n06.farnam.hpc.yale.internal
********************************************************************************
FINALTIME:	1.91 seconds
********************************************************************************