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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.326 C 0.174 G 0.174 T 0.326 

MOTIF 1-AGGGTATC STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 103 P= 2.3e-003
 0.646125 0.163567 0.086447 0.103861
 0.015283 0.006409 0.948381 0.029927
 0.025237 0.000367 0.973710 0.000686
 0.000686 0.000367 0.998261 0.000686
 0.000686 0.000367 0.000367 0.998580
 0.954743 0.029607 0.000367 0.015283
 0.006729 0.000367 0.059252 0.933652
 0.076006 0.748136 0.089092 0.086766

MOTIF 2-ATAGTCGA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 42 P= 1.2e-001
 0.804316 0.079212 0.067757 0.048715
 0.027328 0.105567 0.000656 0.866449
 0.945175 0.000656 0.052943 0.001227
 0.001227 0.000656 0.996890 0.001227
 0.027328 0.026799 0.011461 0.934412
 0.053513 0.944604 0.000656 0.001227
 0.001227 0.000656 0.970747 0.027370
 0.892421 0.000656 0.079595 0.027328

MOTIF 3-CTCAGCTA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 33 P= 1.7e-001
 0.001550 0.996072 0.000829 0.001550
 0.147183 0.000829 0.165889 0.686099
 0.001550 0.907649 0.000829 0.089973
 0.996793 0.000829 0.000829 0.001550
 0.236354 0.000829 0.596313 0.166504
 0.001550 0.996072 0.000829 0.001550
 0.001550 0.000829 0.165889 0.831732
 0.732717 0.066874 0.000829 0.199580

MOTIF 4-CGTCCGCW STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 30 P= 6.7e-001
 0.104593 0.840626 0.001284 0.053497
 0.002402 0.052380 0.942817 0.002402
 0.053497 0.022436 0.001284 0.922782
 0.053497 0.840461 0.001284 0.104757
 0.002402 0.840131 0.001284 0.156183
 0.104593 0.001284 0.840626 0.053497
 0.104593 0.840626 0.001284 0.053497
 0.411331 0.154571 0.073532 0.360566

MOTIF 5-AGTTTCTA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 1.0e+000
 0.808681 0.125162 0.063257 0.002900
 0.002900 0.001551 0.992648 0.002900
 0.002900 0.063257 0.063257 0.870586
 0.002900 0.001551 0.001551 0.993998
 0.002900 0.063257 0.001551 0.932292
 0.002900 0.992648 0.001551 0.002900
 0.002900 0.001551 0.001551 0.993998
 0.746577 0.125162 0.001551 0.126711

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/D19B.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_D19B/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n09.farnam.hpc.yale.internal
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FINALTIME:	1.64 seconds
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