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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.35 C 0.15 G 0.15 T 0.35 

MOTIF 1-AAGGGTAT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 99 P= 8.5e-002
 0.769932 0.029349 0.060390 0.140329
 0.953087 0.045302 0.000483 0.001128
 0.001128 0.022820 0.974924 0.001128
 0.264542 0.000483 0.733847 0.001128
 0.001128 0.000483 0.997261 0.001128
 0.038698 0.045229 0.000483 0.915589
 0.885496 0.000483 0.112892 0.001128
 0.001128 0.000483 0.000483 0.997905

MOTIF 2-ATAGTAAT STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 25 P= 3.0e-001
 0.666531 0.001359 0.127150 0.204960
 0.003171 0.001359 0.064153 0.931317
 0.841783 0.153687 0.001359 0.003171
 0.003171 0.001359 0.992300 0.003171
 0.003171 0.001359 0.001359 0.994111
 0.960277 0.035193 0.001359 0.003171
 0.994111 0.001359 0.001359 0.003171
 0.003171 0.001359 0.001359 0.994111

MOTIF 3-AGCAAACC STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 24 P= 5.0e-001
 0.935995 0.000919 0.018492 0.044595
 0.002144 0.043370 0.934770 0.019717
 0.073544 0.692190 0.018492 0.215774
 0.953568 0.000919 0.000919 0.044595
 0.953568 0.000919 0.000919 0.044595
 0.978446 0.000919 0.000919 0.019717
 0.002144 0.909755 0.000919 0.087182
 0.002144 0.696125 0.085957 0.215774

MOTIF 4-AAGCGAAT STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 66 P= 5.0e-001
 0.940909 0.013636 0.013636 0.031818
 0.940909 0.013636 0.013636 0.031818
 0.031818 0.013636 0.922727 0.031818
 0.031818 0.922727 0.013636 0.031818
 0.031818 0.013636 0.922727 0.031818
 0.940909 0.013636 0.013636 0.031818
 0.940909 0.013636 0.013636 0.031818
 0.031818 0.013636 0.013636 0.940909

MOTIF 5-TCAACATA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 1.0e+000
 0.001686 0.101027 0.000723 0.896564
 0.001686 0.995904 0.000723 0.001686
 0.863165 0.101027 0.034122 0.001686
 0.923628 0.034122 0.000723 0.041527
 0.001686 0.935139 0.061488 0.001686
 0.744972 0.000723 0.234623 0.019682
 0.169112 0.134480 0.000723 0.695686
 0.722438 0.034122 0.101027 0.142413

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/D19A.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_D19A/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n01.farnam.hpc.yale.internal
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FINALTIME:	1.63 seconds
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