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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.248 C 0.252 G 0.252 T 0.248 

MOTIF 1-ACAATGGG STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 58 P= 2.5e-002
 0.890906 0.000962 0.107187 0.000944
 0.000944 0.997149 0.000962 0.000944
 0.997132 0.000962 0.000962 0.000944
 0.970703 0.000962 0.027390 0.000944
 0.033000 0.000962 0.000962 0.965077
 0.027373 0.000962 0.970721 0.000944
 0.193116 0.065072 0.687926 0.053886
 0.134158 0.210374 0.601583 0.053886

MOTIF 2-AGGACGAG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 102 P= 1.2e-001
 0.786660 0.069964 0.055982 0.087394
 0.146212 0.081993 0.756498 0.015298
 0.023899 0.087478 0.813026 0.075598
 0.772653 0.099398 0.115810 0.012140
 0.003288 0.703496 0.105211 0.188004
 0.047379 0.206561 0.698757 0.047303
 0.878000 0.031350 0.000427 0.090223
 0.050499 0.078487 0.842283 0.028732

MOTIF 3-AAAGGACA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 26 P= 7.6e-001
 0.836325 0.001447 0.121064 0.041165
 0.836325 0.121064 0.041191 0.001420
 0.995686 0.001447 0.001447 0.001420
 0.001420 0.017899 0.979260 0.001420
 0.001420 0.001447 0.916096 0.081037
 0.979234 0.001447 0.017899 0.001420
 0.001420 0.715568 0.041191 0.241821
 0.779657 0.097859 0.001447 0.121037

MOTIF 4-GCGGCAGA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 22 P= 1.0e+000
 0.042732 0.042759 0.913035 0.001474
 0.001474 0.954292 0.042759 0.001474
 0.001474 0.001502 0.995550 0.001474
 0.001474 0.001502 0.995550 0.001474
 0.042732 0.954292 0.001502 0.001474
 0.664533 0.125673 0.125673 0.084122
 0.001474 0.001502 0.954292 0.042732
 0.788302 0.001502 0.084149 0.126048

MOTIF 5-CAATTGCA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 21 P= 1.0e+000
 0.002080 0.818524 0.002119 0.177277
 0.993682 0.002119 0.002119 0.002080
 0.993682 0.002119 0.002119 0.002080
 0.002080 0.002119 0.002119 0.993682
 0.118690 0.002119 0.002119 0.877072
 0.002080 0.002119 0.993721 0.002080
 0.205020 0.732569 0.002119 0.060292
 0.993682 0.002119 0.002119 0.002080

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/D.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_D/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n01.farnam.hpc.yale.internal
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FINALTIME:	1.73 seconds
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