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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.279 C 0.221 G 0.221 T 0.279 

MOTIF 1-TCTTATCA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 34 P= 1.7e-001
 0.037225 0.097107 0.001139 0.864528
 0.001442 0.995977 0.001139 0.001442
 0.037282 0.036922 0.036980 0.888815
 0.001442 0.001139 0.036922 0.960496
 0.852801 0.001139 0.036922 0.109137
 0.037225 0.001139 0.001139 0.960496
 0.037225 0.960194 0.001139 0.001442
 0.708626 0.001139 0.216996 0.073239

MOTIF 2-CAGCTGAK STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 29 P= 2.4e-001
 0.019655 0.904963 0.001158 0.074224
 0.944779 0.001158 0.037537 0.016526
 0.140528 0.001158 0.856848 0.001466
 0.001466 0.908034 0.089034 0.001466
 0.037845 0.074033 0.057933 0.830189
 0.016526 0.001158 0.980850 0.001466
 0.959780 0.001158 0.037596 0.001466
 0.001466 0.162086 0.543787 0.292661

MOTIF 3-AACGTACA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 2.4e-001
 0.827028 0.002618 0.084830 0.085525
 0.909240 0.084830 0.002618 0.003313
 0.003313 0.990757 0.002618 0.003313
 0.003313 0.084830 0.908545 0.003313
 0.003313 0.002618 0.002618 0.991452
 0.909240 0.084830 0.002618 0.003313
 0.003313 0.908545 0.084830 0.003313
 0.827028 0.084830 0.084830 0.003313

MOTIF 4-TGTAAACA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 88 P= 7.3e-001
 0.162790 0.060392 0.229939 0.546879
 0.001196 0.000945 0.996664 0.001196
 0.001196 0.000945 0.046794 0.951066
 0.893971 0.103889 0.000945 0.001196
 0.957085 0.040775 0.000945 0.001196
 0.878211 0.000945 0.060296 0.060547
 0.001196 0.700240 0.030621 0.267944
 0.937275 0.000945 0.000945 0.060835

MOTIF 5-CACACAYG STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 32 P= 7.6e-001
 0.002423 0.993241 0.001914 0.002423
 0.873312 0.001914 0.001914 0.122859
 0.002423 0.993241 0.001914 0.002423
 0.692074 0.001914 0.303589 0.002423
 0.002423 0.993241 0.001914 0.002423
 0.993749 0.001914 0.001914 0.002423
 0.002423 0.661645 0.001914 0.334018
 0.002423 0.001914 0.993241 0.002423

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CrebB.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CrebB/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n08.farnam.hpc.yale.internal
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FINALTIME:	1.69 seconds
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