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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.308 C 0.192 G 0.192 T 0.308 

MOTIF 1-GCCATAAA STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 69 P= 1.2e-002
 0.051915 0.179705 0.767255 0.001125
 0.001125 0.943010 0.015568 0.040297
 0.095304 0.902867 0.000703 0.001125
 0.972073 0.000703 0.026098 0.001125
 0.142698 0.000703 0.072016 0.784582
 0.967265 0.005553 0.000703 0.026479
 0.946679 0.026098 0.026098 0.001125
 0.818757 0.026057 0.000703 0.154482

MOTIF 2-CTCTGGTG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 15 P= 5.0e-001
 0.085839 0.826042 0.084471 0.003649
 0.003649 0.002280 0.002280 0.991791
 0.085839 0.908232 0.002280 0.003649
 0.085839 0.002280 0.166925 0.744955
 0.003649 0.002280 0.990423 0.003649
 0.085839 0.002280 0.908232 0.003649
 0.003649 0.002280 0.002280 0.991791
 0.003649 0.084471 0.908232 0.003649

MOTIF 3-GCTGATAA STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 43 P= 5.0e-001
 0.124911 0.000850 0.749781 0.124459
 0.062711 0.842756 0.000850 0.093684
 0.075654 0.000850 0.000850 0.922647
 0.031986 0.000850 0.965805 0.001360
 0.930827 0.000850 0.031476 0.036848
 0.001360 0.000850 0.000850 0.996941
 0.843216 0.000850 0.031476 0.124459
 0.812589 0.031476 0.123949 0.031986

MOTIF 4-AATGGAAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 44 P= 8.8e-001
 0.722028 0.028200 0.083122 0.166650
 0.953214 0.028200 0.012120 0.006466
 0.078396 0.012120 0.006009 0.903475
 0.005734 0.139521 0.799005 0.055741
 0.028657 0.019402 0.935938 0.016002
 0.916239 0.015546 0.028200 0.040016
 0.832406 0.000761 0.055727 0.111106
 0.825901 0.039559 0.067086 0.067454

MOTIF 5-CACATACA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 23 P= 1.0e+000
 0.114017 0.668678 0.001036 0.216270
 0.996271 0.001036 0.001036 0.001657
 0.001657 0.830787 0.113395 0.054161
 0.996271 0.001036 0.001036 0.001657
 0.001657 0.001036 0.001036 0.996271
 0.868698 0.016490 0.038369 0.076443
 0.001657 0.958317 0.038369 0.001657
 0.884213 0.038369 0.038429 0.038990

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/CrebA.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_CrebA/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c27n09.farnam.hpc.yale.internal
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FINALTIME:	1.60 seconds
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