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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.272 C 0.228 G 0.228 T 0.272 

MOTIF 1-GTCAACAR STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 28 P= 5.0e-001
 0.035859 0.001134 0.961652 0.001355
 0.015638 0.001134 0.001134 0.982094
 0.035859 0.927148 0.001134 0.035859
 0.961873 0.035638 0.001134 0.001355
 0.829275 0.070253 0.084834 0.015638
 0.001355 0.947369 0.035638 0.015638
 0.927258 0.001134 0.001134 0.070474
 0.316987 0.070253 0.542287 0.070474

MOTIF 2-TATTTACA STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 18 P= 5.0e-001
 0.002577 0.002157 0.002157 0.993110
 0.993110 0.002157 0.002157 0.002577
 0.002577 0.133615 0.002157 0.861651
 0.002577 0.265924 0.002157 0.729343
 0.002577 0.002157 0.002157 0.993110
 0.993110 0.002157 0.002157 0.002577
 0.002577 0.992689 0.002157 0.002577
 0.861651 0.133615 0.002157 0.002577

MOTIF 3-AATTGCAG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 20 P= 5.0e-001
 0.782234 0.002064 0.213235 0.002467
 0.993404 0.002064 0.002064 0.002467
 0.002467 0.002064 0.002064 0.993404
 0.213637 0.002064 0.002064 0.782234
 0.002467 0.002064 0.993002 0.002467
 0.065282 0.804355 0.002064 0.128299
 0.993404 0.002064 0.002064 0.002467
 0.002467 0.002064 0.993002 0.002467

MOTIF 4-CCTCACCC STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 41 P= 7.0e-001
 0.041695 0.847811 0.001319 0.109175
 0.001576 0.955410 0.001319 0.041695
 0.001576 0.161223 0.001319 0.835883
 0.001576 0.995530 0.001319 0.001576
 0.739147 0.063303 0.041503 0.156046
 0.041695 0.955410 0.001319 0.001576
 0.089115 0.661952 0.001319 0.247614
 0.122323 0.874783 0.001319 0.001576

MOTIF 5-ATTTGTAA STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.933836 0.020709 0.020709 0.024745
 0.024745 0.020709 0.020709 0.933836
 0.024745 0.020709 0.020709 0.933836
 0.024745 0.020709 0.020709 0.933836
 0.024745 0.020709 0.929800 0.024745
 0.024745 0.020709 0.020709 0.933836
 0.933836 0.020709 0.020709 0.024745
 0.933836 0.020709 0.020709 0.024745

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Clk.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Clk/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c23n07.farnam.hpc.yale.internal
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FINALTIME:	1.81 seconds
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