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STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
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MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

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REFERENCE
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If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: Accurate and versatile sequence motif discovery",
bioRxiv, (preprint), Nov. 23, 2020.
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ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.336 C 0.164 G 0.164 T 0.336 

MOTIF 1-ATTKMAAT STREME-1
letter-probability matrix: alength= 4 w= 8 nsites= 96 P= 2.7e-001
 0.894168 0.030324 0.018925 0.056582
 0.037340 0.012915 0.067483 0.882262
 0.053908 0.050681 0.000785 0.894626
 0.036378 0.021941 0.451448 0.490233
 0.490233 0.451448 0.021941 0.036378
 0.894626 0.000785 0.050681 0.053908
 0.882262 0.067483 0.012915 0.037340
 0.056582 0.018925 0.030324 0.894168

MOTIF 2-AGATGGCG STREME-2
letter-probability matrix: alength= 4 w= 8 nsites= 34 P= 3.0e-001
 0.996870 0.000772 0.000772 0.001585
 0.001585 0.000772 0.996057 0.001585
 0.765077 0.000772 0.232566 0.001585
 0.001585 0.000772 0.132359 0.865284
 0.001585 0.000772 0.996057 0.001585
 0.001585 0.000772 0.798570 0.199072
 0.034270 0.963372 0.000772 0.001585
 0.001585 0.000772 0.996057 0.001585

MOTIF 3-AAATGTTG STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 52 P= 3.0e-001
 0.831705 0.060039 0.071348 0.036909
 0.926226 0.036033 0.000832 0.036909
 0.839088 0.000832 0.052428 0.107652
 0.143715 0.000832 0.000832 0.854622
 0.001707 0.000832 0.995753 0.001707
 0.008440 0.000832 0.106776 0.883951
 0.143715 0.000832 0.000832 0.854622
 0.001707 0.000832 0.889403 0.108058

MOTIF 4-CTGAGAAA STREME-4
letter-probability matrix: alength= 4 w= 8 nsites= 45 P= 5.0e-001
 0.001824 0.904217 0.092134 0.001824
 0.153565 0.000889 0.000889 0.844657
 0.255668 0.000889 0.666025 0.077417
 0.920927 0.076360 0.000889 0.001824
 0.001824 0.000889 0.995462 0.001824
 0.883434 0.000889 0.038503 0.077174
 0.800296 0.000889 0.159376 0.039439
 0.958784 0.000889 0.038503 0.001824

MOTIF 5-CACACACW STREME-5
letter-probability matrix: alength= 4 w= 8 nsites= 13 P= 1.0e+000
 0.003189 0.992067 0.001554 0.003189
 0.927945 0.001554 0.001554 0.068947
 0.003189 0.992067 0.001554 0.003189
 0.730038 0.001554 0.067311 0.201097
 0.003189 0.992067 0.001554 0.003189
 0.927945 0.067311 0.001554 0.003189
 0.003189 0.992067 0.001554 0.003189
 0.530095 0.067417 0.001554 0.400934

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Stopped because maximum number of motifs (5) reached.
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COMMAND:	streme --p ../result/final_prediction/fly/fasta/RankLinear8.0_60/Chrac-16.fasta --oc ../result/final_prediction/fly/inference_raw/STREME/RankLinear8.0_60_Chrac-16/ --w 8 --nmotifs 5 --verbosity 1
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CPU:		c28n05.farnam.hpc.yale.internal
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FINALTIME:	1.93 seconds
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